UHGV-0112428

Genome information

Genome length 13,741 bps

CDS count 15

Completeness 70.45% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112428
vOTU ID	vOTU-035997
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245122
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.12
Jumbo phage	No

Genome content
Genome length	13,741 bps
GC content	38.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	92.31%
Average CDS length	846.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112428_1	Structural annotation	PF17548	NA	NA
UHGV-0112428_2	Structural annotation	PF17427	NA	NA
UHGV-0112428_3	UniRef90	UniRef90_A0A345MZF5	DNA polymerase	NA
UHGV-0112428_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0112428_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0112428_4	UniRef90	UniRef90_A0A843HF73	DNA-directed DNA polymerase	NA
UHGV-0112428_4	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0112428_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0112428_4	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0112428_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0112428_6	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0112428_6	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0112428_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0112428_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112428_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0112428_8	PHROG	phrog_291	endolysin	lysis
UHGV-0112428_8	UniRef90	UniRef90_UPI001CC93AA1	SH3 domain-containing protein	NA
UHGV-0112428_8	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0112428_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0112428_8	COG	COG1388	LysM repeat	NA
UHGV-0112428_8	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0112428_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0112428_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0112428_10	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0112428_10	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0112428_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0112428_11	PHROG	phrog_2248	tail protein	tail
UHGV-0112428_11	UniRef90	UniRef90_A0A843FW77	Caud_tail_N domain-containing protein	NA
UHGV-0112428_11	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0112428_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0112428_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0112428_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0112428_12	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0112428_12	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0112428_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0112428_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0112428_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0112428_13	UniRef90	UniRef90_Q9FZW4	Lower collar protein	NA
UHGV-0112428_13	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA