UHGV-0112435

Genome information

Genome length 43,640 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112435
vOTU ID	vOTU-045672
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256897
BioSample	SAMEA3708761
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.73
Jumbo phage	No

Genome content
Genome length	43,640 bps
GC content	57.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.27%
Average CDS length	706.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112435_1	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0112435_2	PHROG	phrog_27610	NA	unknown function
UHGV-0112435_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0112435_3	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0112435_3	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0112435_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112435_3	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0112435_4	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0112435_4	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0112435_4	UniRef90	UniRef90_UPI001D097961	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0112435_4	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0112435_4	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0112435_4	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0112435_4	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0112435_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112435_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112435_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0112435_7	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112435_7	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0112435_7	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0112435_7	Pfam	PF06356	NA	DUF1064
UHGV-0112435_7	Structural annotation	PF06356	NA	NA
UHGV-0112435_10	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0112435_10	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0112435_10	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0112435_10	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0112435_10	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0112435_10	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0112435_10	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0112435_10	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0112435_11	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112435_11	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0112435_11	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0112435_11	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0112435_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0112435_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0112435_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112435_13	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-0112435_13	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0112435_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112435_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0112435_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112435_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0112435_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0112435_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0112435_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112435_14	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0112435_14	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0112435_14	Pfam	PF03837	RecT family	RecT
UHGV-0112435_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0112435_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0112435_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0112435_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112435_15	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0112435_15	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0112435_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0112435_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0112435_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0112435_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0112435_19	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0112435_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112435_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0112435_21	UniRef90	UniRef90_UPI001379CF69	phage antirepressor KilAC domain-containing protein	NA
UHGV-0112435_21	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0112435_21	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0112435_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112435_21	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0112435_21	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0112435_22	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0112435_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112435_22	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0112435_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112435_23	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0112435_23	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0112435_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112435_23	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0112435_24	UniRef90	UniRef90_UPI001BB4762F	DnaJ domain-containing protein	NA
UHGV-0112435_24	eggNOG-mapper	715451.ambt_14505	NA	NA
UHGV-0112435_25	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0112435_25	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0112435_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112435_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112435_25	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0112435_26	KOfam	K14059	int; integrase	NA
UHGV-0112435_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0112435_26	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0112435_26	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0112435_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112435_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0112435_26	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0112435_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112435_29	PHROG	phrog_16490	NA	unknown function
UHGV-0112435_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0112435_30	PHROG	phrog_22984	NA	unknown function
UHGV-0112435_32	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0112435_32	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0112435_32	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0112435_33	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0112435_33	PHROG	phrog_6523	endolysin	lysis
UHGV-0112435_33	UniRef90	UniRef90_A0A3D4D7X9	Peptidase_M15_4 domain-containing protein	NA
UHGV-0112435_33	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0112435_33	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0112435_33	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0112435_33	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0112435_34	PHROG	phrog_13256	NA	unknown function
UHGV-0112435_34	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0112435_36	PHROG	phrog_937	hemolysin	other
UHGV-0112435_36	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0112435_37	PHROG	phrog_22978	NA	unknown function
UHGV-0112435_37	UniRef90	UniRef90_A0A396KH15	PBECR3 domain-containing protein	NA
UHGV-0112435_37	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0112435_38	UniRef90	UniRef90_A0A396K636	NA	NA
UHGV-0112435_38	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0112435_39	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0112435_39	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0112435_39	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0112435_41	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0112435_41	UniRef90	UniRef90_R5ACE5	Peptidase S74 domain-containing protein	NA
UHGV-0112435_41	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0112435_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0112435_41	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0112435_42	PHROG	phrog_12105	NA	unknown function
UHGV-0112435_42	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0112435_43	PHROG	phrog_27545	NA	unknown function
UHGV-0112435_43	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0112435_43	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0112435_43	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0112435_43	Structural annotation	PF16170	NA	NA
UHGV-0112435_44	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0112435_44	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0112435_44	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0112435_44	Pfam	PF19789	NA	DUF6273
UHGV-0112435_44	Structural annotation	PF19789	NA	NA
UHGV-0112435_45	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0112435_45	PHROG	phrog_3420	NA	unknown function
UHGV-0112435_45	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0112435_45	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0112435_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0112435_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0112435_45	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0112435_46	PHROG	phrog_15239	NA	unknown function
UHGV-0112435_46	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0112435_47	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0112435_47	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0112435_47	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0112435_47	Pfam	PF13252	NA	DUF4043
UHGV-0112435_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0112435_47	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112435_48	PHROG	phrog_13908	NA	unknown function
UHGV-0112435_48	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0112435_49	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0112435_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0112435_50	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0112435_50	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0112435_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0112435_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112435_51	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0112435_51	UniRef90	UniRef90_A0A1Y4WJ48	Terminase-like family protein	NA
UHGV-0112435_51	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0112435_51	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0112435_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112435_51	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0112435_52	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0112435_52	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0112435_52	UniRef90	UniRef90_UPI000682BABE	terminase small subunit	NA
UHGV-0112435_52	eggNOG-mapper	1158602.I590_02555	Terminase small subunit	NA
UHGV-0112435_52	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0112435_52	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0112435_52	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0112435_55	PHROG	phrog_9467	NA	unknown function
UHGV-0112435_55	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0112435_55	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0112435_55	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0112435_55	dbAPIS	APIS043	NA	NA
UHGV-0112435_55	Structural annotation	PF13876, PF14359, COG3613	NA	NA
UHGV-0112435_57	PHROG	phrog_38832	NA	unknown function
UHGV-0112435_57	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0112435_58	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA