UHGV-0112447

Genome information

Genome length 31,432 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112447
vOTU ID	vOTU-045674
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_267768
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.34
Jumbo phage	No

Genome content
Genome length	31,432 bps
GC content	57.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.36%
Average CDS length	559.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112447_1	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0112447_1	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0112447_1	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0112447_1	Structural annotation	PF02010, PF06199, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0112447_2	PHROG	phrog_1887	tail protein	tail
UHGV-0112447_2	eggNOG-mapper	1273742.M1IQS1_9CAUD	NA	NA
UHGV-0112447_2	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0112447_3	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0112447_7	PHROG	phrog_937	hemolysin	other
UHGV-0112447_8	PHROG	phrog_608	holin	lysis
UHGV-0112447_8	UniRef90	UniRef90_A0A1I3T262	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0112447_8	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0112447_8	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0112447_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112447_9	PHROG	phrog_15001	endolysin	lysis
UHGV-0112447_9	UniRef90	UniRef90_A0A1I3T551	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112447_9	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112447_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0112447_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112447_9	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0112447_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0112447_11	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0112447_11	UniRef90	UniRef90_A0A1I3T1C6	Helix-turn-helix	NA
UHGV-0112447_11	eggNOG-mapper	762211.BSTEL_1789	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112447_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112447_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0112447_12	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0112447_12	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0112447_12	UniRef90	UniRef90_UPI00083206A4	helix-turn-helix transcriptional regulator	NA
UHGV-0112447_12	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112447_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112447_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112447_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112447_14	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0112447_17	PHROG	phrog_2113	NA	unknown function
UHGV-0112447_17	UniRef90	UniRef90_UPI000835921F	helix-turn-helix domain-containing protein	NA
UHGV-0112447_17	Pfam	PF08279	HTH domain	HTH_11
UHGV-0112447_21	eggNOG-mapper	1235835.C814_00380	NA	NA
UHGV-0112447_21	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0112447_22	PHROG	phrog_16304	NA	unknown function
UHGV-0112447_22	UniRef90	UniRef90_A0A417HNC3	NA	NA
UHGV-0112447_22	eggNOG-mapper	1449126.JQKL01000003_gene1705	ROK family	NA
UHGV-0112447_22	Pfam	PF19808	NA	DUF6291
UHGV-0112447_22	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0112447_22	Structural annotation	PF19808	NA	NA
UHGV-0112447_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112447_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112447_23	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0112447_23	eggNOG-mapper	1128111.HMPREF0870_01541	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112447_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112447_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112447_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112447_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112447_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0112447_25	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112447_25	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0112447_25	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0112447_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0112447_27	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0112447_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0112447_27	UniRef90	UniRef90_A0A1I3J1H4	SNF2 family N-terminal domain-containing protein	NA
UHGV-0112447_27	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0112447_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0112447_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0112447_27	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0112447_29	UniRef90	UniRef90_A0A1I3J1T2	NA	NA
UHGV-0112447_29	Pfam	PF04448	NA	DUF551
UHGV-0112447_29	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0112447_31	PHROG	phrog_8538	NA	unknown function
UHGV-0112447_31	UniRef90	UniRef90_A0A518V877	4Fe-4S ferredoxin-type domain-containing protein	NA
UHGV-0112447_31	eggNOG-mapper	1196322.A370_02189	NA	NA
UHGV-0112447_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112447_33	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0112447_33	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0112447_33	Pfam	PF07374	NA	DUF1492
UHGV-0112447_33	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0112447_34	PHROG	phrog_10678	NA	unknown function
UHGV-0112447_36	UniRef90	UniRef90_UPI00129DE9D4	Arc family DNA-binding protein	NA
UHGV-0112447_38	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0112447_38	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0112447_38	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0112447_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0112447_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0112447_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0112447_39	UniRef90	UniRef90_A0A7C6PV87	Terminase large subunit	NA
UHGV-0112447_39	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0112447_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0112447_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0112447_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0112447_39	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0112447_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0112447_41	UniRef90	UniRef90_A0A419G212	Phage portal protein	NA
UHGV-0112447_41	eggNOG-mapper	913865.DOT_5635	Phage portal protein, HK97 family	NA
UHGV-0112447_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0112447_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0112447_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0112447_41	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0112447_42	KOfam	K06904	NA	NA
UHGV-0112447_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0112447_42	UniRef90	UniRef90_G2G0W3	Phage prohead protease, HK97 family	NA
UHGV-0112447_42	eggNOG-mapper	913865.DOT_5634	Phage prohead protease, HK97 family	NA
UHGV-0112447_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0112447_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0112447_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0112447_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0112447_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0112447_43	UniRef90	UniRef90_UPI001E346EE7	phage major capsid protein	NA
UHGV-0112447_43	eggNOG-mapper	1033744.CAEL01000029_gene1282	phage major capsid protein, HK97 family	NA
UHGV-0112447_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0112447_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0112447_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112447_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0112447_44	UniRef90	UniRef90_UPI00085C4B45	cadherin-like beta sandwich domain-containing protein	NA
UHGV-0112447_44	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0112447_44	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0112447_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112447_44	Structural annotation	PF12733	NA	NA
UHGV-0112447_45	PHROG	phrog_2550	NA	unknown function
UHGV-0112447_45	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0112447_45	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0112447_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0112447_46	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0112447_46	UniRef90	UniRef90_U2R2J1	Putative phage head-tail adaptor	NA
UHGV-0112447_46	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0112447_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0112447_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0112447_47	UniRef90	UniRef90_UPI0019581735	HK97 gp10 family phage protein	NA
UHGV-0112447_47	eggNOG-mapper	663278.Ethha_1841	NA	NA
UHGV-0112447_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0112447_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0112447_48	PHROG	phrog_78	tail terminator	connector
UHGV-0112447_48	eggNOG-mapper	97139.C824_04739	NA	NA
UHGV-0112447_48	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0112447_49	PHROG	phrog_88	major tail protein	tail
UHGV-0112447_49	UniRef90	UniRef90_D9R5G8	Phage major tail protein, phi13 family	NA
UHGV-0112447_49	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0112447_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0112447_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0112447_50	PHROG	phrog_709	NA	unknown function
UHGV-0112447_50	eggNOG-mapper	1410670.JHXF01000015_gene2298	NA	NA
UHGV-0112447_50	Structural annotation	PF11836	NA	NA
UHGV-0112447_51	PHROG	phrog_3033	NA	unknown function
UHGV-0112447_51	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0112447_51	eggNOG-mapper	411489.CLOL250_01719	NA	NA
UHGV-0112447_52	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0112447_52	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0112447_52	eggNOG-mapper	1123263.AUKY01000046_gene477	Phage tail tape measure protein, TP901 family	NA
UHGV-0112447_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0112447_52	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0112447_52	Structural annotation	COG5280	NA	NA