UHGV-0112468

Genome information

Genome length 45,515 bps

CDS count 88

Completeness 96.47% (high-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112468
vOTU ID	vOTU-064928
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250247
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.24
Jumbo phage	No

Genome content
Genome length	45,515 bps
GC content	29.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	85.32%
Average CDS length	444.03 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112468_1	KOfam	K14059	int; integrase	NA
UHGV-0112468_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0112468_1	UniRef90	UniRef90_R5XPH3	Integrase family protein	NA
UHGV-0112468_1	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0112468_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0112468_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112468_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112468_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0112468_2	Structural annotation	PF15968	NA	NA
UHGV-0112468_3	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-0112468_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0112468_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112468_5	UniRef90	UniRef90_H2JIU8	Putative transcriptional regulator	NA
UHGV-0112468_5	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0112468_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112468_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112468_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112468_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0112468_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0112468_6	UniRef90	UniRef90_A0A109WBQ2	HTH-type transcriptional regulator sinR	NA
UHGV-0112468_6	eggNOG-mapper	494416.AYXN01000040_gene2433	PFAM helix-turn-helix domain protein	NA
UHGV-0112468_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112468_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112468_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112468_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112468_7	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0112468_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112468_11	UniRef90	UniRef90_UPI0018C46309	ATP-binding protein	NA
UHGV-0112468_11	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0112468_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0112468_11	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0112468_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0112468_13	UniRef90	UniRef90_A0A7X5DCB3	PDDEXK_1 domain-containing protein	NA
UHGV-0112468_13	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0112468_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0112468_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112468_14	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0112468_14	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0112468_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112468_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0112468_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112468_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0112468_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0112468_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0112468_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0112468_15	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0112468_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0112468_16	PHROG	phrog_7566	NA	unknown function
UHGV-0112468_16	UniRef90	UniRef90_A0A417QFX9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0112468_18	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0112468_18	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-0112468_18	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0112468_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0112468_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0112468_19	UniRef90	UniRef90_A3DI90	AAA ATPase	NA
UHGV-0112468_19	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0112468_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0112468_19	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0112468_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0112468_19	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0112468_20	PHROG	phrog_4973	NA	unknown function
UHGV-0112468_20	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0112468_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0112468_20	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0112468_21	KOfam	K06940	NA	NA
UHGV-0112468_21	PHROG	phrog_32498	NA	unknown function
UHGV-0112468_21	UniRef90	UniRef90_A0A415HVR5	YkgJ family cysteine cluster protein	NA
UHGV-0112468_21	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0112468_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0112468_24	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112468_24	eggNOG-mapper	1304880.JAGB01000002_gene2229	NA	NA
UHGV-0112468_24	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0112468_27	PHROG	phrog_625	NA	unknown function
UHGV-0112468_27	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0112468_27	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0112468_27	Structural annotation	PF12961	NA	NA
UHGV-0112468_28	PHROG	phrog_98	NA	unknown function
UHGV-0112468_28	UniRef90	UniRef90_A0A0X8JTB6	YopX domain-containing protein	NA
UHGV-0112468_28	eggNOG-mapper	536233.CLO_1555	YopX protein	NA
UHGV-0112468_28	Pfam	PF09643	YopX protein	YopX
UHGV-0112468_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112468_38	eggNOG-mapper	536233.CLO_1052	NA	NA
UHGV-0112468_39	Structural annotation	PF15188	NA	NA
UHGV-0112468_40	KOfam	K07665	cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR	NA
UHGV-0112468_40	PHROG	phrog_731	NA	unknown function
UHGV-0112468_40	Pfam	PF00486	Transcriptional regulatory protein, C terminal	Trans_reg_C
UHGV-0112468_40	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0112468_43	PHROG	phrog_1828	NA	unknown function
UHGV-0112468_52	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0112468_56	PHROG	phrog_1454	NA	unknown function
UHGV-0112468_57	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0112468_57	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0112468_57	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0112468_57	Pfam	PF14359	NA	DUF4406
UHGV-0112468_57	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0112468_58	PHROG	phrog_918	NA	unknown function
UHGV-0112468_58	UniRef90	UniRef90_UPI0013775FB5	NA	NA
UHGV-0112468_58	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0112468_58	Pfam	PF19791	NA	DUF6275
UHGV-0112468_58	Structural annotation	PF19791	NA	NA
UHGV-0112468_59	PHROG	phrog_774	NA	unknown function
UHGV-0112468_59	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0112468_60	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0112468_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0112468_61	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0112468_61	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0112468_61	COG	COG5410	NA	NA
UHGV-0112468_61	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0112468_62	PHROG	phrog_1233	NA	unknown function
UHGV-0112468_62	UniRef90	UniRef90_A0A4U9XN35	NA	NA
UHGV-0112468_62	eggNOG-mapper	86416.Clopa_2540	NA	NA
UHGV-0112468_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112468_63	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0112468_63	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112468_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112468_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112468_64	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0112468_64	Structural annotation	PF14265	NA	NA
UHGV-0112468_65	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0112468_65	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0112468_65	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0112468_65	Pfam	PF17236	NA	DUF5309
UHGV-0112468_65	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0112468_66	KOfam	K17249	pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]	NA
UHGV-0112468_66	UniRef90	UniRef90_A0A3A9SUZ7	Glycosyltransferase	NA
UHGV-0112468_66	eggNOG-mapper	1174504.AJTN02000077_gene3161	Glycosyl transferases group 1	NA
UHGV-0112468_66	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-0112468_66	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0112468_66	Structural annotation	PF00534, PF16994, MF_01695, TIGR04005, COG0438	NA	NA
UHGV-0112468_68	Structural annotation	TIGR01560	NA	NA
UHGV-0112468_69	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0112468_70	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0112468_71	Structural annotation	PF05657	NA	NA
UHGV-0112468_72	PHROG	phrog_158	major tail protein	tail
UHGV-0112468_72	UniRef90	UniRef90_A0A7Z7CEA8	Phage tail tube protein, TTP	NA
UHGV-0112468_72	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-0112468_72	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0112468_72	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0112468_73	Structural annotation	PF16478	NA	NA
UHGV-0112468_75	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112468_75	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0112468_75	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0112468_75	Structural annotation	PF20155	NA	NA
UHGV-0112468_76	PHROG	phrog_1194	NA	unknown function
UHGV-0112468_76	eggNOG-mapper	324057.Pjdr2_1553	NA	NA
UHGV-0112468_76	Pfam	PF20458	NA	DUF6711
UHGV-0112468_77	PHROG	phrog_6616	tail protein	tail
UHGV-0112468_77	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0112468_77	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0112468_77	COG	COG4926	Phage-related protein	NA
UHGV-0112468_77	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0112468_78	eggNOG-mapper	1232453.BAIF02000059_gene1614	NA	NA
UHGV-0112468_79	Structural annotation	PF03906	NA	NA
UHGV-0112468_80	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0112468_82	PHROG	phrog_13632	NA	unknown function
UHGV-0112468_82	eggNOG-mapper	1399942.U3PIX4_9CAUD	NA	NA
UHGV-0112468_83	PHROG	phrog_881	holin	lysis
UHGV-0112468_83	UniRef90	UniRef90_A0A6G7WEI6	Holin	NA
UHGV-0112468_83	eggNOG-mapper	1140001.I571_01849	Putative phage holin Dp-1	NA
UHGV-0112468_83	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0112468_83	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0112468_84	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0112468_84	PHROG	phrog_18955	NA	unknown function
UHGV-0112468_84	UniRef90	UniRef90_R7LPC2	Peptidoglycan-binding domain 1 protein	NA
UHGV-0112468_84	eggNOG-mapper	1304880.JAGB01000002_gene2417	Spoiid lytb domain protein	NA
UHGV-0112468_84	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0112468_84	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0112468_84	COG	COG2385	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	NA
UHGV-0112468_84	Structural annotation	PF03412, PF18342, PF06347, NF040670, NF033920, COG3807, COG3271	NA	NA
UHGV-0112468_86	KOfam	K07341	doc; death on curing protein	NA
UHGV-0112468_86	PHROG	phrog_577	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0112468_86	UniRef90	UniRef90_A0A7W1HLF5	Type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-0112468_86	eggNOG-mapper	882086.SacxiDRAFT_0571	Fic/DOC family	NA
UHGV-0112468_86	NCBIFam	TIGR01550.1	type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-0112468_86	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0112468_87	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0112468_87	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112468_87	UniRef90	UniRef90_R6YGA8	Post-exponential-phase responses transcriptional regulator	NA
UHGV-0112468_87	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112468_87	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112468_87	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0112468_87	COG	COG3800	Predicted transcriptional regulator	NA
UHGV-0112468_87	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA