UHGV-0112510

Genome information

Genome length 25,380 bps

CDS count 31

Completeness 63.48% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112510
vOTU ID	vOTU-041789
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_241115
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.83
Jumbo phage	No

Genome content
Genome length	25,380 bps
GC content	49.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	88.34%
Average CDS length	726.68 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112510_1	PHROG	phrog_1331	NA	unknown function
UHGV-0112510_1	UniRef90	UniRef90_A0A0J2A1R9	NA	NA
UHGV-0112510_1	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0112510_2	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0112510_2	UniRef90	UniRef90_A0A244BWW7	DNA replication protein	NA
UHGV-0112510_2	eggNOG-mapper	10754.VG18_BPP22	DNA replication	NA
UHGV-0112510_2	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0112510_2	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0112510_2	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0112510_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112510_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112510_3	UniRef90	UniRef90_A0A2V2J552	DNA helicase	NA
UHGV-0112510_3	eggNOG-mapper	37554.Q9MCP7_BPHK7	DNA helicase activity	NA
UHGV-0112510_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112510_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112510_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112510_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0112510_4	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-0112510_4	eggNOG-mapper	199310.c1554	NinB protein	NA
UHGV-0112510_4	Pfam	PF05772	NinB protein	NinB
UHGV-0112510_4	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0112510_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0112510_5	PHROG	phrog_33262	NA	unknown function
UHGV-0112510_5	UniRef90	UniRef90_UPI0011226670	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0112510_5	eggNOG-mapper	10710.Y290_LAMBD	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0112510_5	PADLOC	SspD_00001	SspD	SSP
UHGV-0112510_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0112510_5	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0112510_6	PHROG	phrog_1511	NA	unknown function
UHGV-0112510_6	eggNOG-mapper	1147146.K7P8B7_9CAUD	exonuclease activity	NA
UHGV-0112510_7	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112510_7	UniRef90	UniRef90_P03770	Protein ninG	NA
UHGV-0112510_7	eggNOG-mapper	1147157.K7PHM2_9CAUD	Bacteriophage Lambda NinG protein	NA
UHGV-0112510_7	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0112510_7	Structural annotation	PF05766	NA	NA
UHGV-0112510_8	PHROG	phrog_268	NA	unknown function
UHGV-0112510_8	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-0112510_8	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-0112510_8	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-0112510_8	Structural annotation	PF06322	NA	NA
UHGV-0112510_9	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0112510_9	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112510_9	UniRef90	UniRef90_A0A152CN92	Serine/threonine protein phosphatase	NA
UHGV-0112510_9	eggNOG-mapper	432201.K7P7K6_9CAUD	hydrolase activity	NA
UHGV-0112510_9	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0112510_9	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0112510_10	PHROG	phrog_943	anti-termination protein Q-like	transcription regulation
UHGV-0112510_10	UniRef90	UniRef90_D2A7X4	Q protein	NA
UHGV-0112510_10	eggNOG-mapper	10761.Q716B8_BPSFV	negative regulation of DNA-dependent transcription, termination	NA
UHGV-0112510_10	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0112510_10	Structural annotation	PF06530	NA	NA
UHGV-0112510_11	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0112510_11	UniRef90	UniRef90_P03705	Antiholin	NA
UHGV-0112510_11	eggNOG-mapper	10761.Q716B7_BPSFV	Pfam:Phage_holin_3_1	NA
UHGV-0112510_11	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0112510_11	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0112510_11	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0112510_12	PHROG	phrog_17029	NA	unknown function
UHGV-0112510_12	UniRef90	UniRef90_P03706	Endolysin	NA
UHGV-0112510_12	eggNOG-mapper	1524881.A0A088CPU7_9CAUD	Phage lysozyme	NA
UHGV-0112510_12	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0112510_12	HAMAP	MF_04109	Endolysin	NA
UHGV-0112510_12	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0112510_13	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0112510_13	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0112510_13	UniRef90	UniRef90_A0A653FRE1	Spanin, inner membrane subunit	NA
UHGV-0112510_13	eggNOG-mapper	1127357.I1TEI0_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0112510_13	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0112510_13	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0112510_13	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0112510_14	PHROG	phrog_872	NA	unknown function
UHGV-0112510_14	UniRef90	UniRef90_A0A1M0D5R8	NA	NA
UHGV-0112510_14	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0112510_14	Pfam	PF11195	NA	DUF2829
UHGV-0112510_14	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0112510_14	Structural annotation	PF11195	NA	NA
UHGV-0112510_15	PHROG	phrog_571	NA	unknown function
UHGV-0112510_15	UniRef90	UniRef90_A0A067HHZ1	NA	NA
UHGV-0112510_15	eggNOG-mapper	10761.Q716B0_BPSFV	NA	NA
UHGV-0112510_15	Pfam	PF10834	NA	DUF2560
UHGV-0112510_15	Structural annotation	PF10834	NA	NA
UHGV-0112510_16	PHROG	phrog_3546	NA	unknown function
UHGV-0112510_16	UniRef90	UniRef90_A0A2H4A350	Orf59c protein	NA
UHGV-0112510_16	eggNOG-mapper	1524881.A0A088CPS9_9CAUD	NA	NA
UHGV-0112510_17	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0112510_17	UniRef90	UniRef90_A0A2V2J7E3	Ubiquitin carboxyl-hydrolase	NA
UHGV-0112510_17	eggNOG-mapper	10761.Q716H4_BPSFV	NA	NA
UHGV-0112510_17	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0112510_17	Structural annotation	PF20901	NA	NA
UHGV-0112510_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112510_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112510_18	UniRef90	UniRef90_Q9AZ00	Terminase large subunit	NA
UHGV-0112510_18	eggNOG-mapper	754331.AEME01000001_gene5	Phage terminase, large subunit	NA
UHGV-0112510_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112510_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112510_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112510_18	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112510_19	PHROG	phrog_14911	NA	unknown function
UHGV-0112510_19	UniRef90	UniRef90_E9TCA7	Putative ATP synthase F1, epsilon subunit	NA
UHGV-0112510_19	eggNOG-mapper	1524881.A0A088CQ69_9CAUD	actin binding	NA
UHGV-0112510_19	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0112510_19	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112510_20	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0112510_20	UniRef90	UniRef90_A0A6C9DRL0	Scaffolding protein	NA
UHGV-0112510_20	eggNOG-mapper	754331.AEME01000001_gene7	NA	NA
UHGV-0112510_20	Pfam	PF09306	Bacteriophage, scaffolding protein	Phage-scaffold
UHGV-0112510_20	Structural annotation	PF09306	NA	NA
UHGV-0112510_21	PHROG	phrog_283	major head protein	head and packaging
UHGV-0112510_21	UniRef90	UniRef90_A0A376L777	Putative coat protein	NA
UHGV-0112510_21	eggNOG-mapper	754331.AEME01000001_gene8	P22 coat protein - gene protein 5	NA
UHGV-0112510_21	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0112510_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0112510_22	PHROG	phrog_1175	NA	unknown function
UHGV-0112510_23	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0112510_23	UniRef90	UniRef90_A0A066T024	DNA stabilization protein	NA
UHGV-0112510_23	eggNOG-mapper	754331.AEME01000001_gene10	Packaged DNA stabilization protein gp4	NA
UHGV-0112510_23	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0112510_23	Structural annotation	PF11650	NA	NA
UHGV-0112510_24	PHROG	phrog_578	head closure Hc3	connector
UHGV-0112510_24	UniRef90	UniRef90_P26749	Packaged DNA stabilization protein gp10	NA
UHGV-0112510_24	eggNOG-mapper	754331.AEME01000001_gene11	Packaged DNA stabilization protein gp10	NA
UHGV-0112510_24	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0112510_24	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0112510_25	PHROG	phrog_1030	NA	unknown function
UHGV-0112510_25	UniRef90	UniRef90_L3Q3P8	Phage_tail_NK domain-containing protein	NA
UHGV-0112510_25	eggNOG-mapper	10761.Q716G6_BPSFV	Pfam:Phage_tail_NK	NA
UHGV-0112510_25	Pfam	PF16532	Sf6-type phage tail needle knob or tip of some Caudovirales	Phage_tail_NK
UHGV-0112510_25	Structural annotation	PF16532, NF033147	NA	NA
UHGV-0112510_26	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0112510_26	UniRef90	UniRef90_G8EYJ5	Head assembly protein	NA
UHGV-0112510_26	eggNOG-mapper	1090133.G8EYJ5_9CAUD	NA	NA
UHGV-0112510_26	Pfam	PF11039	NA	DUF2824
UHGV-0112510_26	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0112510_27	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0112510_27	UniRef90	UniRef90_Q716G4	Gene 11 protein	NA
UHGV-0112510_27	eggNOG-mapper	1090133.G5DA80_9CAUD	viral entry into host cell	NA
UHGV-0112510_28	PHROG	phrog_917	released from the phage upon host infection	other
UHGV-0112510_28	UniRef90	UniRef90_A0A5E9ZZZ4	DNA transfer protein	NA
UHGV-0112510_28	eggNOG-mapper	173443.Q8H9G2_BPST6	Pfam:Inj_translocase	NA
UHGV-0112510_28	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0112510_28	Structural annotation	PF16928	NA	NA
UHGV-0112510_29	PHROG	phrog_29117	head morphogenesis	head and packaging
UHGV-0112510_29	UniRef90	UniRef90_D3H2B4	Putative prophage DNA transfer protein	NA
UHGV-0112510_29	eggNOG-mapper	10761.Q716G2_BPSFV	NA	NA
UHGV-0112510_31	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0112510_31	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0112510_31	UniRef90	UniRef90_A0A0A7XQ32	AlpA family phage regulatory protein	NA
UHGV-0112510_31	eggNOG-mapper	1380358.JADJ01000001_gene892	transcriptional regulator	NA
UHGV-0112510_31	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0112510_31	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0112510_31	Structural annotation	PF05930, NF033499, COG3311	NA	NA