UHGV-0112525

Genome information

Genome length 45,179 bps

CDS count 85

Completeness 57.37% (medium-quality)

geNomad score 0.9665

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112525
vOTU ID	vOTU-042428
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250945
BioSample	SAMEA3708877
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9665
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.25
Jumbo phage	No

Genome content
Genome length	45,179 bps
GC content	40.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	85.08%
Average CDS length	454.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112525_1	KOfam	K07495	K07495; putative transposase	NA
UHGV-0112525_1	UniRef90	UniRef90_A0A127SWY3	DDE superfamily endonuclease (Fragment)	NA
UHGV-0112525_1	eggNOG-mapper	1077285.AGDG01000023_gene1023	COG COG3385 FOG Transposase and inactivated derivatives	NA
UHGV-0112525_1	COG	COG3385	IS4 transposase InsG	NA
UHGV-0112525_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0112525_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0112525_3	UniRef90	UniRef90_A0A7H1MQK8	Tyrosine-type recombinase/integrase	NA
UHGV-0112525_3	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-0112525_3	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0112525_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0112525_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112525_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112525_3	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0112525_4	Structural annotation	PF09560	NA	NA
UHGV-0112525_5	UniRef90	UniRef90_A0A6I1S5I8	GNAT family N-acetyltransferase	NA
UHGV-0112525_5	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0112525_5	Structural annotation	PF13673, MF_02018, NF000487, COG3153	NA	NA
UHGV-0112525_6	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-0112525_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112525_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0112525_11	UniRef90	UniRef90_A0A353E5E4	Cytosine-specific methyltransferase	NA
UHGV-0112525_11	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0112525_11	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0112525_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112525_11	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112525_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112525_11	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0112525_12	eggNOG-mapper	411490.ANACAC_02374	NA	NA
UHGV-0112525_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112525_16	PHROG	phrog_8684	NA	unknown function
UHGV-0112525_16	UniRef90	UniRef90_UPI001C38350F	YopX family protein	NA
UHGV-0112525_16	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0112525_16	Pfam	PF09643	YopX protein	YopX
UHGV-0112525_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112525_21	Structural annotation	PF13069	NA	NA
UHGV-0112525_24	PHROG	phrog_872	NA	unknown function
UHGV-0112525_24	UniRef90	UniRef90_UPI001C2CB369	NA	NA
UHGV-0112525_24	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0112525_24	Pfam	PF11195	NA	DUF2829
UHGV-0112525_24	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0112525_24	Structural annotation	PF11195	NA	NA
UHGV-0112525_26	PHROG	phrog_874	NA	unknown function
UHGV-0112525_26	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0112525_31	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0112525_31	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0112525_33	PHROG	phrog_10066	NA	unknown function
UHGV-0112525_33	Structural annotation	PF02699, TIGR00405, COG1862	NA	NA
UHGV-0112525_36	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0112525_37	Structural annotation	PF08299, NF004686	NA	NA
UHGV-0112525_38	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0112525_38	UniRef90	UniRef90_A0A7H1MQI5	NA	NA
UHGV-0112525_38	eggNOG-mapper	762982.HMPREF9442_01170	NA	NA
UHGV-0112525_38	Pfam	PF14386	NA	DUF4417
UHGV-0112525_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0112525_38	Structural annotation	PF14386	NA	NA
UHGV-0112525_40	Structural annotation	PF20204	NA	NA
UHGV-0112525_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112525_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0112525_41	UniRef90	UniRef90_A0A174JKW6	Prophage antirepressor	NA
UHGV-0112525_41	eggNOG-mapper	1408422.JHYF01000021_gene999	Phage antirepressor protein	NA
UHGV-0112525_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0112525_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112525_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0112525_41	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0112525_43	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0112525_43	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0112525_43	UniRef90	UniRef90_A0A6A7VII9	Methyltransferase	NA
UHGV-0112525_43	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0112525_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0112525_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0112525_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0112525_43	COG	COG0863	DNA modification methylase	NA
UHGV-0112525_43	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0112525_44	PHROG	phrog_1569	NA	unknown function
UHGV-0112525_44	UniRef90	UniRef90_R6WNR2	S-AdoMet_synt_N domain-containing protein	NA
UHGV-0112525_44	eggNOG-mapper	411490.ANACAC_00747	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-0112525_44	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0112525_44	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0112525_44	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0112525_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112525_48	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0112525_48	UniRef90	UniRef90_A0A7H1MQH3	PBSX family phage terminase large subunit	NA
UHGV-0112525_48	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0112525_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112525_48	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0112525_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112525_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112525_48	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112525_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112525_49	UniRef90	UniRef90_A0A7H1MQH2	Phage portal protein	NA
UHGV-0112525_49	eggNOG-mapper	357276.EL88_12720	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112525_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112525_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112525_51	PHROG	phrog_16625	NA	unknown function
UHGV-0112525_51	UniRef90	UniRef90_A0A7H1MQH1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0112525_51	eggNOG-mapper	445970.ALIPUT_02658	NA	NA
UHGV-0112525_51	Structural annotation	PF06152	NA	NA
UHGV-0112525_52	PHROG	phrog_28631	NA	unknown function
UHGV-0112525_52	UniRef90	UniRef90_UPI001C3C35EF	toxin glutamine deamidase domain-containing protein	NA
UHGV-0112525_52	eggNOG-mapper	1122971.BAME01000043_gene3752	NA	NA
UHGV-0112525_52	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0112525_52	COG	COG2369	NA	NA
UHGV-0112525_56	eggNOG-mapper	357276.EL88_08435	NA	NA
UHGV-0112525_61	Structural annotation	PF13424, NF011886	NA	NA
UHGV-0112525_62	PHROG	phrog_2320	NA	unknown function
UHGV-0112525_62	Structural annotation	PF20840	NA	NA
UHGV-0112525_63	PHROG	phrog_5377	NA	unknown function
UHGV-0112525_63	eggNOG-mapper	1123058.KB894238_gene1870	NA	NA
UHGV-0112525_64	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112525_64	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0112525_64	UniRef90	UniRef90_UPI00068A9E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-0112525_64	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-0112525_64	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112525_64	COG	COG3617	Prophage antirepressor	NA
UHGV-0112525_64	Structural annotation	PF03374, PF08346, COG3645, COG3561	NA	NA
UHGV-0112525_65	Structural annotation	PF02237, NF037951	NA	NA
UHGV-0112525_68	PHROG	phrog_824	NA	unknown function
UHGV-0112525_68	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-0112525_68	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0112525_68	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0112525_72	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0112525_73	PHROG	phrog_36980	NA	unknown function
UHGV-0112525_73	eggNOG-mapper	1211813.CAPH01000015_gene733	NA	NA
UHGV-0112525_74	PHROG	phrog_15937	NA	unknown function
UHGV-0112525_74	eggNOG-mapper	1121100.JCM6294_1075	NA	NA
UHGV-0112525_75	PHROG	phrog_28300	NA	unknown function
UHGV-0112525_75	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-0112525_75	Structural annotation	PF14445	NA	NA
UHGV-0112525_77	UniRef90	UniRef90_A0A7H1MQD5	NA	NA
UHGV-0112525_77	eggNOG-mapper	445970.ALIPUT_02650	NA	NA
UHGV-0112525_77	Structural annotation	PF12987	NA	NA
UHGV-0112525_80	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0112525_80	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0112525_81	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0112525_83	UniRef90	UniRef90_A0A7H1MQC8	NA	NA
UHGV-0112525_83	eggNOG-mapper	1233951.IO90_00335	NA	NA
UHGV-0112525_83	PADLOC	mREase_II_00008	Type II methyl-directed restriction enzyme	RM
UHGV-0112525_83	Pfam	PF04480	NA	DUF559
UHGV-0112525_83	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0112525_83	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0112525_85	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112525_85	UniRef90	UniRef90_A0A2I7QYX1	T5orf172 domain-containing protein	NA
UHGV-0112525_85	eggNOG-mapper	424716.B1GS49_9CAUD	DNA binding	NA