UHGV-0112628

Genome information

Genome length 43,239 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112628
vOTU ID	vOTU-045683
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238469
BioSample	SAMEA3708587
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.46
Jumbo phage	No

Genome content
Genome length	43,239 bps
GC content	57.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.80%
Average CDS length	692.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112628_1	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0112628_3	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0112628_3	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0112628_3	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0112628_3	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0112628_3	Structural annotation	PF16677	NA	NA
UHGV-0112628_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112628_4	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0112628_4	UniRef90	UniRef90_A0A1Y4WJ48	Terminase-like family protein	NA
UHGV-0112628_4	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0112628_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0112628_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112628_4	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0112628_5	PHROG	phrog_156	portal protein	head and packaging
UHGV-0112628_5	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0112628_5	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0112628_5	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0112628_6	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0112628_7	PHROG	phrog_13908	NA	unknown function
UHGV-0112628_7	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0112628_7	COG	COG2868	NA	NA
UHGV-0112628_8	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0112628_8	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0112628_8	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0112628_8	Pfam	PF13252	NA	DUF4043
UHGV-0112628_8	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0112628_8	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112628_9	PHROG	phrog_15239	NA	unknown function
UHGV-0112628_9	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0112628_10	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0112628_10	PHROG	phrog_3420	NA	unknown function
UHGV-0112628_10	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0112628_10	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0112628_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0112628_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0112628_10	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0112628_11	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0112628_11	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0112628_11	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0112628_11	Pfam	PF19789	NA	DUF6273
UHGV-0112628_11	Structural annotation	PF19789	NA	NA
UHGV-0112628_12	PHROG	phrog_27545	NA	unknown function
UHGV-0112628_12	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0112628_12	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0112628_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0112628_12	Structural annotation	PF16170	NA	NA
UHGV-0112628_13	PHROG	phrog_12105	NA	unknown function
UHGV-0112628_13	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0112628_14	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0112628_14	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0112628_15	Structural annotation	PF18707, NF041740, COG5501	NA	NA
UHGV-0112628_17	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0112628_17	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0112628_17	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0112628_18	UniRef90	UniRef90_A0A396K636	NA	NA
UHGV-0112628_18	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0112628_19	PHROG	phrog_22978	NA	unknown function
UHGV-0112628_19	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0112628_19	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0112628_19	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0112628_20	PHROG	phrog_937	hemolysin	other
UHGV-0112628_20	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0112628_22	PHROG	phrog_13256	NA	unknown function
UHGV-0112628_22	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0112628_23	PHROG	phrog_21357	endolysin	lysis
UHGV-0112628_23	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0112628_23	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0112628_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-0112628_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0112628_23	Structural annotation	TIGR02594	NA	NA
UHGV-0112628_24	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0112628_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0112628_24	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0112628_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112628_30	KOfam	K14059	int; integrase	NA
UHGV-0112628_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0112628_30	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0112628_30	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0112628_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112628_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112628_30	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0112628_31	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0112628_31	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0112628_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112628_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112628_31	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0112628_32	UniRef90	UniRef90_UPI001BB4762F	DnaJ domain-containing protein	NA
UHGV-0112628_32	eggNOG-mapper	715451.ambt_14505	NA	NA
UHGV-0112628_34	eggNOG-mapper	1437600.JDUI01000007_gene828	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112628_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112628_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112628_34	Structural annotation	PF01381, MF_00535, NF041951, TIGR02607, COG3655, COG3093	NA	NA
UHGV-0112628_35	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0112628_35	eggNOG-mapper	742733.HMPREF9469_01812	helix-turn-helix	NA
UHGV-0112628_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112628_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112628_37	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0112628_37	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0112628_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112628_41	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0112628_41	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0112628_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0112628_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0112628_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0112628_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0112628_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0112628_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112628_42	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0112628_42	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0112628_42	Pfam	PF03837	RecT family	RecT
UHGV-0112628_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0112628_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0112628_42	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0112628_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0112628_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112628_43	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0112628_43	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0112628_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112628_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0112628_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112628_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0112628_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0112628_44	PHROG	phrog_16304	NA	unknown function
UHGV-0112628_44	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0112628_44	eggNOG-mapper	1265490.JHVY01000003_gene3091	NA	NA
UHGV-0112628_44	Pfam	PF19808	NA	DUF6291
UHGV-0112628_44	Structural annotation	PF19808	NA	NA
UHGV-0112628_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0112628_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0112628_45	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0112628_45	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0112628_45	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0112628_45	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0112628_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0112628_45	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0112628_48	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0112628_49	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112628_49	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0112628_49	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0112628_49	Pfam	PF06356	NA	DUF1064
UHGV-0112628_49	Structural annotation	PF06356	NA	NA
UHGV-0112628_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112628_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112628_52	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0112628_52	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0112628_52	UniRef90	UniRef90_A0A1Q6T6B8	Methyltransferase	NA
UHGV-0112628_52	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0112628_52	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0112628_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0112628_52	COG	COG0863	DNA modification methylase	NA
UHGV-0112628_52	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0112628_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112628_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112628_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0112628_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112628_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0112628_54	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0112628_54	eggNOG-mapper	887325.HMPREF0381_0364	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0112628_54	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0112628_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112628_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112628_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112628_55	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0112628_55	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112628_55	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0112628_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112628_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112628_58	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0112628_58	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA