UHGV-0112629

Genome information

Genome length 43,246 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112629
vOTU ID	vOTU-001212
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238468
BioSample	SAMEA3708587
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.77
Jumbo phage	No

Genome content
Genome length	43,246 bps
GC content	46.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.78%
Average CDS length	558.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112629_1	PHROG	phrog_1794	amidase	lysis
UHGV-0112629_1	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0112629_1	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112629_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112629_2	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0112629_3	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0112629_4	PHROG	phrog_16490	NA	unknown function
UHGV-0112629_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0112629_5	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0112629_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0112629_7	KOfam	K14059	int; integrase	NA
UHGV-0112629_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0112629_7	UniRef90	UniRef90_R5H870	Site-specific recombinase phage integrase family	NA
UHGV-0112629_7	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0112629_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112629_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112629_7	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0112629_8	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0112629_8	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0112629_8	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0112629_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0112629_8	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0112629_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112629_11	UniRef90	UniRef90_R5HIC1	Helix-turn-helix domain protein	NA
UHGV-0112629_11	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0112629_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112629_13	PHROG	phrog_21028	NA	unknown function
UHGV-0112629_13	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0112629_13	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0112629_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112629_14	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0112629_14	UniRef90	UniRef90_A0A3D0X8U2	HTH cro/C1-type domain-containing protein	NA
UHGV-0112629_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0112629_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112629_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112629_18	PHROG	phrog_21613	NA	unknown function
UHGV-0112629_18	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-0112629_19	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112629_19	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0112629_19	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-0112629_19	Pfam	PF12684	NA	DUF3799
UHGV-0112629_19	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0112629_19	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0112629_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0112629_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112629_20	UniRef90	UniRef90_A0A2U1BEJ1	Single-stranded DNA-binding protein	NA
UHGV-0112629_20	eggNOG-mapper	552398.HMPREF0866_01635	Single-strand binding protein family	NA
UHGV-0112629_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112629_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0112629_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112629_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0112629_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0112629_21	UniRef90	UniRef90_G9YN41	DNA binding domain, excisionase family	NA
UHGV-0112629_21	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0112629_22	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112629_22	eggNOG-mapper	1203606.HMPREF1526_01881	HNH endonuclease	NA
UHGV-0112629_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0112629_22	Structural annotation	PF19808	NA	NA
UHGV-0112629_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0112629_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0112629_23	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0112629_23	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0112629_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0112629_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0112629_24	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0112629_24	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0112629_24	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0112629_24	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0112629_24	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0112629_26	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0112629_26	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0112629_26	UniRef90	UniRef90_L7VGK5	dCTP deaminase, dUMP-forming	NA
UHGV-0112629_26	eggNOG-mapper	1121335.Clst_0069	TIGRFAM deoxycytidine triphosphate deaminase	NA
UHGV-0112629_26	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0112629_26	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0112629_26	COG	COG0717	dCTP deaminase	NA
UHGV-0112629_26	HAMAP	MF_00146	dCTP deaminase, dUMP-forming [dcd]	NA
UHGV-0112629_26	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0112629_27	PHROG	phrog_474	phosphofructokinase	other
UHGV-0112629_27	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0112629_27	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0112629_27	Pfam	PF19905	NA	DUF6378
UHGV-0112629_27	Structural annotation	PF19905	NA	NA
UHGV-0112629_28	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112629_28	UniRef90	UniRef90_A0A6B4TI31	NUMOD4 domain-containing protein	NA
UHGV-0112629_28	eggNOG-mapper	1345695.CLSA_c30140	NUMOD4 motif	NA
UHGV-0112629_28	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0112629_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0112629_28	Structural annotation	PF07463	NA	NA
UHGV-0112629_29	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0112629_29	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-0112629_29	eggNOG-mapper	1121121.KB894312_gene3179	DNA N-6-adenine-methyltransferase	NA
UHGV-0112629_29	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0112629_29	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0112629_29	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0112629_30	eggNOG-mapper	665956.HMPREF1032_00638	NA	NA
UHGV-0112629_31	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0112629_35	PHROG	phrog_38832	NA	unknown function
UHGV-0112629_35	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0112629_40	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0112629_40	eggNOG-mapper	1227349.C170_11270	NA	NA
UHGV-0112629_40	Structural annotation	PF16475	NA	NA
UHGV-0112629_41	PHROG	phrog_8684	NA	unknown function
UHGV-0112629_41	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0112629_41	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0112629_41	Pfam	PF09643	YopX protein	YopX
UHGV-0112629_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112629_42	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112629_42	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0112629_42	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0112629_43	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-0112629_43	eggNOG-mapper	1232443.BAIA02000078_gene38	NA	NA
UHGV-0112629_43	Structural annotation	PF13542	NA	NA
UHGV-0112629_44	PHROG	phrog_1233	NA	unknown function
UHGV-0112629_44	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0112629_44	Structural annotation	PF13058	NA	NA
UHGV-0112629_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112629_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0112629_45	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-0112629_45	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0112629_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0112629_45	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0112629_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112629_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112629_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0112629_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0112629_46	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0112629_46	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0112629_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112629_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0112629_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0112629_47	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0112629_47	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0112629_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0112629_47	COG	COG2369	NA	NA
UHGV-0112629_47	Structural annotation	PF06152	NA	NA
UHGV-0112629_50	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0112629_50	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0112629_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0112629_51	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0112629_51	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0112629_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0112629_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0112629_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112629_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0112629_52	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0112629_53	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0112629_53	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0112629_54	PHROG	phrog_3366	NA	unknown function
UHGV-0112629_54	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0112629_54	Pfam	PF20536	NA	DUF6751
UHGV-0112629_54	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0112629_55	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0112629_55	UniRef90	UniRef90_UPI00137AF39D	minor capsid protein	NA
UHGV-0112629_55	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0112629_55	Structural annotation	PF11114	NA	NA
UHGV-0112629_56	PHROG	phrog_3266	tail completion	connector
UHGV-0112629_56	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0112629_56	Structural annotation	PF12691	NA	NA
UHGV-0112629_57	PHROG	phrog_820	major tail protein	tail
UHGV-0112629_57	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0112629_57	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0112629_57	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0112629_58	PHROG	phrog_4450	NA	unknown function
UHGV-0112629_58	eggNOG-mapper	545697.HMPREF0216_02856	NA	NA
UHGV-0112629_58	Pfam	PF20378	NA	DUF6673
UHGV-0112629_58	Structural annotation	PF20378	NA	NA
UHGV-0112629_59	PHROG	phrog_706	NA	unknown function
UHGV-0112629_59	UniRef90	UniRef90_UPI0013DE0285	Gp15 family bacteriophage protein	NA
UHGV-0112629_59	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0112629_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0112629_59	Structural annotation	PF06854	NA	NA
UHGV-0112629_60	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0112629_60	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0112629_60	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0112629_60	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0112629_60	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0112629_60	COG	COG5283	Phage-related tail protein	NA
UHGV-0112629_60	Structural annotation	PF10145, PF05276, TIGR01760, COG5280	NA	NA
UHGV-0112629_61	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0112629_62	PHROG	phrog_13879	NA	unknown function
UHGV-0112629_62	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-0112629_62	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0112629_64	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0112629_64	PHROG	phrog_11157	NA	unknown function
UHGV-0112629_64	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0112629_64	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0112629_64	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0112629_64	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0112629_64	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0112629_64	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0112629_68	PHROG	phrog_937	hemolysin	other
UHGV-0112629_68	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0112629_68	Pfam	PF10018	Vitamin-D-receptor interacting Mediator subunit 4	Med4
UHGV-0112629_69	PHROG	phrog_443	holin	lysis
UHGV-0112629_69	UniRef90	UniRef90_UPI00137A08C5	holin	NA
UHGV-0112629_69	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0112629_69	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0112629_69	Structural annotation	PF16945	NA	NA
UHGV-0112629_71	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112629_71	PHROG	phrog_7698	endolysin	lysis
UHGV-0112629_71	UniRef90	UniRef90_UPI001959AF0B	peptidoglycan recognition protein family protein	NA
UHGV-0112629_71	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112629_71	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0112629_71	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112629_71	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA