UHGV-0112663

Genome information

Genome length 61,560 bps

CDS count 105

Completeness 99.90% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112663
vOTU ID	vOTU-065488
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238192
BioSample	SAMEA3708482
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.01
Jumbo phage	No

Genome content
Genome length	61,560 bps
GC content	40.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	105
CDS density	86.51%
Average CDS length	510.80 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112663_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112663_1	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0112663_1	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0112663_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0112663_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112663_1	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0112663_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112663_4	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0112663_4	UniRef90	UniRef90_A0A173S6K7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112663_4	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0112663_4	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0112663_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112663_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112663_4	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0112663_6	UniRef90	UniRef90_A0A6L5YHY2	Sarcolemmal membrane-associated protein	NA
UHGV-0112663_6	eggNOG-mapper	1235792.C808_01059	NA	NA
UHGV-0112663_7	eggNOG-mapper	397287.C807_03473	NA	NA
UHGV-0112663_10	PHROG	phrog_20593	NA	unknown function
UHGV-0112663_13	PHROG	phrog_8684	NA	unknown function
UHGV-0112663_13	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0112663_13	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0112663_13	Pfam	PF09643	YopX protein	YopX
UHGV-0112663_13	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0112663_13	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112663_14	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0112663_15	PHROG	phrog_22292	NA	unknown function
UHGV-0112663_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112663_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112663_18	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0112663_18	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112663_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112663_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112663_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112663_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112663_19	PHROG	phrog_11769	NA	unknown function
UHGV-0112663_19	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0112663_19	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0112663_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0112663_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0112663_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0112663_20	PHROG	phrog_19106	NA	unknown function
UHGV-0112663_20	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0112663_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0112663_20	Structural annotation	TIGR01453	NA	NA
UHGV-0112663_22	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0112663_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0112663_22	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0112663_22	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0112663_22	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0112663_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0112663_22	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0112663_23	PHROG	phrog_25456	NA	unknown function
UHGV-0112663_24	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112663_24	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0112663_24	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0112663_24	Pfam	PF03837	RecT family	RecT
UHGV-0112663_24	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0112663_26	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0112663_28	PHROG	phrog_2600	NA	unknown function
UHGV-0112663_28	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA
UHGV-0112663_29	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0112663_29	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112663_29	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0112663_29	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0112663_29	Pfam	PF13476	AAA domain	AAA_23
UHGV-0112663_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0112663_29	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0112663_30	PHROG	phrog_26861	NA	unknown function
UHGV-0112663_30	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0112663_30	eggNOG-mapper	1304880.JAGB01000001_gene702	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0112663_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112663_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112663_30	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0112663_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112663_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0112663_33	UniRef90	UniRef90_A0A1T5K3B0	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0112663_33	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0112663_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0112663_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112663_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0112663_33	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0112663_37	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0112663_37	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-0112663_37	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0112663_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0112663_37	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0112663_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0112663_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0112663_40	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0112663_40	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0112663_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112663_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0112663_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112663_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112663_41	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0112663_41	Structural annotation	NF040910	NA	NA
UHGV-0112663_42	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0112663_43	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0112663_44	PHROG	phrog_17196	kinase	other
UHGV-0112663_44	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0112663_44	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0112663_45	PHROG	phrog_18190	NA	unknown function
UHGV-0112663_45	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0112663_45	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0112663_45	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0112663_45	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0112663_46	PHROG	phrog_1194	NA	unknown function
UHGV-0112663_46	Pfam	PF20458	NA	DUF6711
UHGV-0112663_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0112663_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0112663_47	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0112663_47	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0112663_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0112663_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0112663_47	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0112663_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112663_49	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0112663_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0112663_50	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112663_50	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0112663_50	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-0112663_50	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0112663_50	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0112663_50	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0112663_50	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0112663_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112663_51	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0112663_51	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0112663_51	COG	COG1511	NA	NA
UHGV-0112663_52	PHROG	phrog_14030	NA	unknown function
UHGV-0112663_52	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0112663_52	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0112663_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112663_55	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0112663_55	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0112663_56	Structural annotation	PF05657	NA	NA
UHGV-0112663_57	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0112663_57	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0112663_57	AcrCatalog	cluster_24841	NA	NA
UHGV-0112663_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0112663_59	PHROG	phrog_443	holin	lysis
UHGV-0112663_59	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0112663_59	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0112663_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0112663_59	Structural annotation	PF16945	NA	NA
UHGV-0112663_60	PHROG	phrog_4105	NA	unknown function
UHGV-0112663_60	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0112663_61	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0112663_62	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0112663_62	Structural annotation	PF21169	NA	NA
UHGV-0112663_63	PHROG	phrog_544	major head protein	head and packaging
UHGV-0112663_63	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0112663_63	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0112663_63	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0112663_63	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112663_65	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112663_65	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0112663_65	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112663_65	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112663_65	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112663_66	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112663_66	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0112663_66	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0112663_66	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112663_66	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0112663_67	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0112663_67	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0112663_67	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0112663_67	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0112663_67	COG	COG5410	NA	NA
UHGV-0112663_67	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0112663_68	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0112663_68	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0112663_68	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0112663_73	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0112663_76	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0112663_76	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0112663_78	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0112663_79	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0112663_79	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0112663_79	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0112663_79	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0112663_79	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0112663_79	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0112663_80	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0112663_81	Structural annotation	PF19923	NA	NA
UHGV-0112663_82	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0112663_84	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0112663_84	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112663_84	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112663_85	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-0112663_85	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112663_85	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112663_89	Structural annotation	PF08207, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0112663_93	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0112663_94	PHROG	phrog_20016	NA	unknown function
UHGV-0112663_94	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0112663_94	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0112663_94	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112663_95	PHROG	phrog_16490	NA	unknown function
UHGV-0112663_95	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0112663_96	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0112663_97	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0112663_99	KOfam	K14059	int; integrase	NA
UHGV-0112663_99	PHROG	phrog_1	integrase	integration and excision
UHGV-0112663_99	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0112663_99	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0112663_99	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112663_99	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112663_99	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0112663_100	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0112663_100	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0112663_100	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0112663_101	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0112663_101	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0112663_101	AcrCatalog	cluster_47493	NA	NA
UHGV-0112663_101	Structural annotation	PF00145, MF_00341, COG0270	NA	NA