UHGV-0112682

Genome information

Genome length 50,855 bps

CDS count 81

Completeness 88.16% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112682
vOTU ID	vOTU-027146
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253691
BioSample	SAMEA3708728
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.53
Jumbo phage	No

Genome content
Genome length	50,855 bps
GC content	40.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	86.92%
Average CDS length	548.04 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112682_1	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0112682_2	PHROG	phrog_22292	NA	unknown function
UHGV-0112682_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112682_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112682_5	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0112682_5	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112682_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112682_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112682_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112682_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112682_6	PHROG	phrog_11769	NA	unknown function
UHGV-0112682_6	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0112682_6	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0112682_6	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0112682_6	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0112682_6	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0112682_7	PHROG	phrog_19106	NA	unknown function
UHGV-0112682_7	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0112682_7	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0112682_7	Structural annotation	TIGR01453	NA	NA
UHGV-0112682_10	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0112682_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0112682_10	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0112682_10	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0112682_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0112682_10	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0112682_11	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0112682_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0112682_13	PHROG	phrog_25456	NA	unknown function
UHGV-0112682_15	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112682_15	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0112682_15	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0112682_15	Pfam	PF03837	RecT family	RecT
UHGV-0112682_15	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0112682_17	PHROG	phrog_2164	NA	unknown function
UHGV-0112682_17	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0112682_18	PHROG	phrog_4433	NA	unknown function
UHGV-0112682_18	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0112682_18	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0112682_18	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0112682_20	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0112682_20	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112682_20	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0112682_20	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0112682_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0112682_20	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0112682_21	PHROG	phrog_26861	NA	unknown function
UHGV-0112682_21	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0112682_21	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0112682_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112682_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112682_21	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0112682_26	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0112682_26	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0112682_26	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0112682_26	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0112682_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0112682_26	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0112682_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0112682_30	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0112682_30	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0112682_30	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0112682_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112682_30	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0112682_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112682_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112682_31	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0112682_31	Structural annotation	NF040910	NA	NA
UHGV-0112682_32	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0112682_34	PHROG	phrog_17196	kinase	other
UHGV-0112682_34	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0112682_34	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0112682_35	PHROG	phrog_18190	NA	unknown function
UHGV-0112682_35	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0112682_35	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0112682_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0112682_35	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0112682_36	PHROG	phrog_1194	NA	unknown function
UHGV-0112682_36	Pfam	PF20458	NA	DUF6711
UHGV-0112682_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0112682_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0112682_37	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0112682_37	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0112682_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0112682_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0112682_37	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0112682_38	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0112682_38	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0112682_38	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0112682_39	PHROG	phrog_806	NA	unknown function
UHGV-0112682_39	UniRef90	UniRef90_N1ZUR1	NA	NA
UHGV-0112682_39	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0112682_39	Pfam	PF11611	NA	DUF4352
UHGV-0112682_39	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0112682_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112682_40	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0112682_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0112682_41	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112682_41	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0112682_41	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-0112682_41	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0112682_41	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0112682_41	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0112682_41	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0112682_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112682_42	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0112682_42	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0112682_42	COG	COG1511	NA	NA
UHGV-0112682_43	PHROG	phrog_14030	NA	unknown function
UHGV-0112682_43	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0112682_43	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0112682_43	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112682_46	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0112682_46	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0112682_47	Structural annotation	PF05657	NA	NA
UHGV-0112682_48	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0112682_48	AcrCatalog	cluster_24841	NA	NA
UHGV-0112682_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0112682_50	PHROG	phrog_443	holin	lysis
UHGV-0112682_50	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0112682_50	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0112682_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0112682_50	Structural annotation	PF16945	NA	NA
UHGV-0112682_51	PHROG	phrog_4105	NA	unknown function
UHGV-0112682_51	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0112682_52	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0112682_53	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0112682_53	Structural annotation	PF21169	NA	NA
UHGV-0112682_54	PHROG	phrog_29	major head protein	head and packaging
UHGV-0112682_54	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0112682_54	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0112682_54	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0112682_54	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0112682_55	PHROG	phrog_909	major head protein	head and packaging
UHGV-0112682_55	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0112682_56	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0112682_57	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112682_57	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-0112682_57	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112682_57	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112682_57	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112682_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112682_58	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0112682_58	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0112682_58	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112682_58	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0112682_59	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0112682_59	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0112682_59	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0112682_59	COG	COG5410	NA	NA
UHGV-0112682_59	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0112682_60	PHROG	phrog_2316	NA	unknown function
UHGV-0112682_60	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0112682_60	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0112682_60	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0112682_63	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0112682_67	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0112682_69	Structural annotation	PF04606	NA	NA
UHGV-0112682_70	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0112682_71	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0112682_71	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112682_71	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112682_72	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0112682_72	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0112682_72	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-0112682_72	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0112682_72	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0112682_72	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0112682_72	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0112682_75	PHROG	phrog_1233	NA	unknown function
UHGV-0112682_75	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0112682_75	Structural annotation	PF13058	NA	NA
UHGV-0112682_76	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0112682_77	PHROG	phrog_20016	NA	unknown function
UHGV-0112682_77	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0112682_77	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0112682_77	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112682_78	PHROG	phrog_16490	NA	unknown function
UHGV-0112682_78	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0112682_79	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0112682_80	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA