UHGV-0112864

Genome information

Genome length 31,880 bps

CDS count 42

Completeness 71.23% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112864
vOTU ID	vOTU-015419
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309754
BioSample	SAMEA37107418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.93
Jumbo phage	No

Genome content
Genome length	31,880 bps
GC content	40.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	96.68%
Average CDS length	740.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112864_1	Structural annotation	PF16640	NA	NA
UHGV-0112864_2	eggNOG-mapper	1121098.HMPREF1534_01117	NA	NA
UHGV-0112864_3	PHROG	phrog_38044	NA	unknown function
UHGV-0112864_3	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0112864_3	COG	COG4926	Phage-related protein	NA
UHGV-0112864_3	Structural annotation	PF04862, PF21634, PF20236, NF033675	NA	NA
UHGV-0112864_4	PHROG	phrog_24616	NA	unknown function
UHGV-0112864_4	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0112864_4	eggNOG-mapper	357276.EL88_08350	NA	NA
UHGV-0112864_4	Structural annotation	PF20459	NA	NA
UHGV-0112864_5	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0112864_5	eggNOG-mapper	357276.EL88_08355	NA	NA
UHGV-0112864_5	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0112864_6	PHROG	phrog_37138	NA	unknown function
UHGV-0112864_6	UniRef90	UniRef90_F3PDX4	Conserved domain protein	NA
UHGV-0112864_6	eggNOG-mapper	357276.EL88_08360	NA	NA
UHGV-0112864_7	PHROG	phrog_21217	NA	unknown function
UHGV-0112864_7	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0112864_8	PHROG	phrog_38780	NA	unknown function
UHGV-0112864_8	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0112864_8	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-0112864_8	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0112864_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0112864_9	PHROG	phrog_33547	NA	unknown function
UHGV-0112864_9	UniRef90	UniRef90_A0A3E4KCH8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0112864_9	eggNOG-mapper	357276.EL88_08375	Clp protease	NA
UHGV-0112864_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0112864_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0112864_9	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0112864_10	PHROG	phrog_17790	NA	unknown function
UHGV-0112864_10	UniRef90	UniRef90_A0A1Y4AU28	Mor domain-containing protein	NA
UHGV-0112864_10	eggNOG-mapper	357276.EL88_08380	NA	NA
UHGV-0112864_10	Pfam	PF08279	HTH domain	HTH_11
UHGV-0112864_11	PHROG	phrog_37298	NA	unknown function
UHGV-0112864_11	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0112864_11	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0112864_11	COG	COG1511	NA	NA
UHGV-0112864_11	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0112864_12	PHROG	phrog_33698	NA	unknown function
UHGV-0112864_12	eggNOG-mapper	483215.BACFIN_07520	NA	NA
UHGV-0112864_12	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0112864_13	PHROG	phrog_37065	NA	unknown function
UHGV-0112864_13	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0112864_13	Structural annotation	PF17972, PF06199, NF040788	NA	NA
UHGV-0112864_14	PHROG	phrog_31246	NA	unknown function
UHGV-0112864_14	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0112864_14	eggNOG-mapper	357276.EL88_08400	NA	NA
UHGV-0112864_15	PHROG	phrog_33245	NA	unknown function
UHGV-0112864_15	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0112864_15	eggNOG-mapper	357276.EL88_08405	NA	NA
UHGV-0112864_15	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0112864_16	PHROG	phrog_28240	NA	unknown function
UHGV-0112864_16	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0112864_16	eggNOG-mapper	357276.EL88_08410	NA	NA
UHGV-0112864_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112864_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0112864_17	UniRef90	UniRef90_A0A3E4KC94	Phage portal protein	NA
UHGV-0112864_17	eggNOG-mapper	357276.EL88_08415	Phage terminase large subunit	NA
UHGV-0112864_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112864_17	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112864_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0112864_18	UniRef90	UniRef90_A0A3E4KCC1	DNA-packaging protein	NA
UHGV-0112864_18	eggNOG-mapper	357276.EL88_08420	DNA-packaging protein gp3	NA
UHGV-0112864_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0112864_18	Structural annotation	PF16677	NA	NA
UHGV-0112864_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0112864_19	PHROG	phrog_5475	NA	unknown function
UHGV-0112864_19	UniRef90	UniRef90_A0A1Q6G834	ParB domain-containing protein	NA
UHGV-0112864_19	eggNOG-mapper	357276.EL88_08425	chromosome segregation	NA
UHGV-0112864_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0112864_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0112864_19	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-0112864_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0112864_19	Structural annotation	PF02195, PF05148, MF_00472, NF008264, TIGR00180, COG2227	NA	NA
UHGV-0112864_20	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0112864_20	UniRef90	UniRef90_A0A3E4KC90	ParB domain-containing protein	NA
UHGV-0112864_20	eggNOG-mapper	357276.EL88_08430	ParB-like nuclease domain	NA
UHGV-0112864_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0112864_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0112864_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0112864_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0112864_21	eggNOG-mapper	357276.EL88_08435	NA	NA
UHGV-0112864_22	PHROG	phrog_9133	NA	unknown function
UHGV-0112864_22	UniRef90	UniRef90_A0A7J5HWZ6	SAM-dependent DNA methyltransferase	NA
UHGV-0112864_22	eggNOG-mapper	357276.EL88_22910	DNA restriction-modification system	NA
UHGV-0112864_22	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0112864_22	Structural annotation	PF02384, MF_02217, TIGR02469, COG2263	NA	NA
UHGV-0112864_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0112864_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0112864_23	UniRef90	UniRef90_A0A854M0D4	Integrase	NA
UHGV-0112864_23	eggNOG-mapper	585543.HMPREF0969_03618	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0112864_23	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0112864_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112864_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112864_23	Structural annotation	PF00589, PF02899, MF_02055, NF040815, COG4973	NA	NA
UHGV-0112864_26	PHROG	phrog_17519	NA	unknown function
UHGV-0112864_26	UniRef90	UniRef90_A0A174S5G9	NA	NA
UHGV-0112864_26	eggNOG-mapper	484018.BACPLE_02420	NA	NA
UHGV-0112864_26	Pfam	PF12083	NA	DUF3560
UHGV-0112864_26	Structural annotation	PF12083	NA	NA
UHGV-0112864_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0112864_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0112864_27	UniRef90	UniRef90_B5D093	Helicase C-terminal domain protein	NA
UHGV-0112864_27	eggNOG-mapper	484018.BACPLE_02416	SNF2 family N-terminal domain	NA
UHGV-0112864_27	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0112864_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0112864_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0112864_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0112864_27	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0112864_28	eggNOG-mapper	484018.BACPLE_02415	NA	NA
UHGV-0112864_30	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0112864_30	eggNOG-mapper	484018.BACPLE_02413	NA	NA
UHGV-0112864_30	Structural annotation	PF11056	NA	NA
UHGV-0112864_31	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112864_31	UniRef90	UniRef90_A0A7J5LDP5	HNHc domain-containing protein	NA
UHGV-0112864_31	eggNOG-mapper	420324.KI911970_gene1424	HNH endonuclease	NA
UHGV-0112864_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0112864_32	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0112864_32	UniRef90	UniRef90_UPI0018A0FDEF	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0112864_32	eggNOG-mapper	484018.BACPLE_02412	NA	NA
UHGV-0112864_32	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0112864_33	eggNOG-mapper	484018.BACPLE_02411	NA	NA
UHGV-0112864_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0112864_34	UniRef90	UniRef90_A0A7J5LDS0	Serine/threonine protein kinase	NA
UHGV-0112864_34	eggNOG-mapper	484018.BACPLE_02410	RecT family	NA
UHGV-0112864_34	Pfam	PF03837	RecT family	RecT
UHGV-0112864_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0112864_34	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0112864_36	eggNOG-mapper	484018.BACPLE_02408	NA	NA
UHGV-0112864_37	UniRef90	UniRef90_B5D084	Transcriptional regulator, LuxR family	NA
UHGV-0112864_37	eggNOG-mapper	484018.BACPLE_02407	helix_turn_helix, Lux Regulon	NA
UHGV-0112864_37	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0112864_38	UniRef90	UniRef90_A0A3E4NCV5	Transcriptional regulator	NA
UHGV-0112864_41	PHROG	phrog_15742	NA	unknown function
UHGV-0112864_41	UniRef90	UniRef90_F3PDT0	Conserved domain protein	NA
UHGV-0112864_41	eggNOG-mapper	1235788.C802_00094	NA	NA
UHGV-0112864_42	UniRef90	UniRef90_UPI00103281FB	helix-turn-helix transcriptional regulator	NA
UHGV-0112864_42	eggNOG-mapper	762984.HMPREF9445_00136	Transcriptional regulator	NA
UHGV-0112864_42	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0112864_42	Structural annotation	PF12844, NF041951, COG1396	NA	NA