UHGV-0113014

Genome information

Genome length 35,243 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113014
vOTU ID	vOTU-045689
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298005
BioSample	SAMEA4431932
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.16
Jumbo phage	No

Genome content
Genome length	35,243 bps
GC content	44.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.16%
Average CDS length	524.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113014_3	UniRef90	UniRef90_A0A8J6PM04	NA	NA
UHGV-0113014_3	Structural annotation	NF041588	NA	NA
UHGV-0113014_5	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0113014_5	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0113014_5	UniRef90	UniRef90_A0A3R0GAF0	Restriction alleviation protein, Lar family	NA
UHGV-0113014_5	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-0113014_5	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0113014_5	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0113014_5	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0113014_5	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0113014_5	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0113014_7	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0113014_7	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0113014_7	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0113014_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113014_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113014_9	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-0113014_9	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0113014_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113014_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113014_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0113014_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0113014_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0113014_10	UniRef90	UniRef90_A0A6N8HZR2	DNA helicase	NA
UHGV-0113014_10	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0113014_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0113014_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0113014_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0113014_10	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0113014_11	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113014_11	UniRef90	UniRef90_A0A1V4IJQ1	DnaB_2 domain-containing protein	NA
UHGV-0113014_11	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0113014_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0113014_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0113014_12	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0113014_13	PHROG	phrog_862	NA	unknown function
UHGV-0113014_13	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0113014_13	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0113014_21	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0113014_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0113014_22	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0113014_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113014_22	UniRef90	UniRef90_UPI000F62FEE7	helix-turn-helix transcriptional regulator	NA
UHGV-0113014_22	eggNOG-mapper	742740.HMPREF9474_04360	Pou domain - N-terminal to homeobox domain	NA
UHGV-0113014_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113014_22	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0113014_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113014_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0113014_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0113014_25	UniRef90	UniRef90_C0ECX6	Resolvase, N-terminal domain protein	NA
UHGV-0113014_25	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0113014_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113014_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0113014_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113014_25	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0113014_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113014_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113014_27	UniRef90	UniRef90_A0A1C6E7A3	HTH-type transcriptional regulator immR	NA
UHGV-0113014_27	eggNOG-mapper	428125.CLOLEP_01303	domain, Protein	NA
UHGV-0113014_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113014_27	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0113014_27	Structural annotation	PF12844, MF_00535, NF041575, COG1396	NA	NA
UHGV-0113014_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113014_28	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0113014_28	UniRef90	UniRef90_A0A1C6E6S6	HTH-type transcriptional regulator sinR	NA
UHGV-0113014_28	eggNOG-mapper	428125.CLOLEP_01304	DNA-binding helix-turn-helix protein	NA
UHGV-0113014_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113014_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113014_30	PHROG	phrog_1281	NA	unknown function
UHGV-0113014_30	UniRef90	UniRef90_A0A0X8KA51	NA	NA
UHGV-0113014_30	eggNOG-mapper	1000569.HMPREF1040_1612	NA	NA
UHGV-0113014_30	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0113014_30	COG	COG3600	NA	NA
UHGV-0113014_30	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0113014_31	PHROG	phrog_297	holin	lysis
UHGV-0113014_31	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0113014_31	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0113014_31	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0113014_31	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0113014_31	COG	COG5546	NA	NA
UHGV-0113014_31	Structural annotation	COG5546	NA	NA
UHGV-0113014_32	PHROG	phrog_1863	NA	unknown function
UHGV-0113014_32	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0113014_32	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0113014_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0113014_33	PHROG	phrog_291	endolysin	lysis
UHGV-0113014_33	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-0113014_33	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0113014_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0113014_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0113014_33	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0113014_34	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-0113014_34	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0113014_35	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0113014_35	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0113014_35	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0113014_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0113014_36	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-0113014_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0113014_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0113014_37	UniRef90	UniRef90_A7VNP8	Phage tail tape measure protein, TP901 family	NA
UHGV-0113014_37	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0113014_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0113014_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0113014_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0113014_38	PHROG	phrog_706	NA	unknown function
UHGV-0113014_38	UniRef90	UniRef90_A7VNQ0	Bacteriophage Gp15 protein	NA
UHGV-0113014_38	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0113014_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0113014_38	Structural annotation	PF06854	NA	NA
UHGV-0113014_39	Structural annotation	PF10666	NA	NA
UHGV-0113014_40	PHROG	phrog_820	major tail protein	tail
UHGV-0113014_40	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0113014_40	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0113014_40	COG	COG5492	NA	NA
UHGV-0113014_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0113014_41	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0113014_41	Structural annotation	PF12691	NA	NA
UHGV-0113014_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113014_42	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-0113014_42	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0113014_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0113014_43	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0113014_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0113014_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113014_44	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-0113014_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0113014_45	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0113014_45	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0113014_45	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0113014_49	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0113014_49	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0113014_51	PHROG	phrog_34144	NA	unknown function
UHGV-0113014_51	eggNOG-mapper	938288.HG326225_gene1282	NA	NA
UHGV-0113014_51	Structural annotation	PF20111	NA	NA
UHGV-0113014_52	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113014_52	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0113014_52	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0113014_52	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113014_52	COG	COG2369	NA	NA
UHGV-0113014_52	Structural annotation	PF06152	NA	NA
UHGV-0113014_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113014_53	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-0113014_53	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0113014_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113014_53	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0113014_53	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113014_54	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113014_54	PHROG	phrog_29775	NA	unknown function
UHGV-0113014_54	UniRef90	UniRef90_A7VTB2	Phage terminase, large subunit, PBSX family	NA
UHGV-0113014_54	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0113014_54	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113014_54	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113014_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113014_54	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113014_55	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-0113014_55	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0113014_55	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0113014_55	Structural annotation	PF13542	NA	NA
UHGV-0113014_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113014_57	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0113014_57	eggNOG-mapper	1408303.JNJJ01000084_gene2550	NA	NA
UHGV-0113014_57	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0113014_57	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0113014_57	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0113014_61	PHROG	phrog_25732	NA	unknown function
UHGV-0113014_62	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0113014_62	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA