UHGV-0113026

Genome information

Genome length 37,594 bps

CDS count 53

Completeness 53.95% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113026
vOTU ID	vOTU-042432
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297258
BioSample	SAMEA4431905
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.52
Jumbo phage	No

Genome content
Genome length	37,594 bps
GC content	43.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.15%
Average CDS length	662.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113026_1	eggNOG-mapper	1262914.BN533_00070	PFAM Uncharacterised ACR, YagE family COG1723	NA
UHGV-0113026_1	COG	COG1723	NA	NA
UHGV-0113026_2	KOfam	K03695	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB	NA
UHGV-0113026_2	PHROG	phrog_4871	ATP-dependent protease	other
UHGV-0113026_2	UniRef90	UniRef90_A0A8B2QN17	Chaperone protein ClpB	NA
UHGV-0113026_2	eggNOG-mapper	1262914.BN533_00071	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	NA
UHGV-0113026_2	Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	Clp_N
UHGV-0113026_2	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0113026_2	Pfam	PF17871	AAA lid domain	AAA_lid_9
UHGV-0113026_2	Pfam	PF07724	AAA domain (Cdc48 subfamily)	AAA_2
UHGV-0113026_2	Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	ClpB_D2-small
UHGV-0113026_2	NCBIFam	TIGR03346.1	ATP-dependent chaperone ClpB	NA
UHGV-0113026_2	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0113026_2	Structural annotation	PF07724, PF10431, PF05621, PF17871, MF_00175, MF_03023, TIGR03346, COG0542	NA	NA
UHGV-0113026_3	KOfam	K14059	int; integrase	NA
UHGV-0113026_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0113026_3	UniRef90	UniRef90_A0A412X637	Site-specific integrase (Fragment)	NA
UHGV-0113026_3	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0113026_3	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0113026_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0113026_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113026_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0113026_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0113026_4	PHROG	phrog_8436	NA	unknown function
UHGV-0113026_4	UniRef90	UniRef90_UPI001CC0305C	zinc ribbon domain-containing protein	NA
UHGV-0113026_4	eggNOG-mapper	633.DJ40_1290	zinc-ribbon domain	NA
UHGV-0113026_5	UniRef90	UniRef90_UPI001AED1210	NA	NA
UHGV-0113026_5	eggNOG-mapper	997346.HMPREF9374_2182	NA	NA
UHGV-0113026_5	COG	COG1714	NA	NA
UHGV-0113026_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0113026_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0113026_6	UniRef90	UniRef90_A0A133PK56	DNA-binding helix-turn-helix protein	NA
UHGV-0113026_6	eggNOG-mapper	1111134.HMPREF1253_1209	Peptidase S24-like	NA
UHGV-0113026_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0113026_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0113026_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0113026_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0113026_7	UniRef90	UniRef90_A0A127EGR4	NA	NA
UHGV-0113026_7	eggNOG-mapper	1064535.MELS_1289	NA	NA
UHGV-0113026_7	Pfam	PF05339	NA	DUF739
UHGV-0113026_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0113026_7	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0113026_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113026_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0113026_8	UniRef90	UniRef90_A0A7X2XHL3	Phage antirepressor Ant	NA
UHGV-0113026_8	eggNOG-mapper	663952.SDD27957_09340	AntA/AntB antirepressor	NA
UHGV-0113026_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0113026_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113026_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0113026_8	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0113026_14	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113026_14	UniRef90	UniRef90_UPI001032CF2B	ERF family protein	NA
UHGV-0113026_14	eggNOG-mapper	1205680.CAKO01000006_gene3229	ERF superfamily	NA
UHGV-0113026_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0113026_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0113026_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0113026_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0113026_15	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0113026_16	PHROG	phrog_7566	NA	unknown function
UHGV-0113026_16	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0113026_17	PHROG	phrog_11769	NA	unknown function
UHGV-0113026_17	UniRef90	UniRef90_A0A7X3BW49	DnaD domain protein	NA
UHGV-0113026_17	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0113026_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0113026_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0113026_17	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0113026_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0113026_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0113026_18	UniRef90	UniRef90_A0A7X3BWY1	DNA helicase	NA
UHGV-0113026_18	eggNOG-mapper	1485543.JMME01000021_gene800	DnaB-like helicase N terminal domain	NA
UHGV-0113026_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0113026_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0113026_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0113026_19	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0113026_19	PHROG	phrog_923	NA	unknown function
UHGV-0113026_19	UniRef90	UniRef90_A0A412X6I1	Pentapeptide repeat-containing protein	NA
UHGV-0113026_19	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0113026_19	Structural annotation	PF13599, NF011744	NA	NA
UHGV-0113026_20	Structural annotation	NF011854	NA	NA
UHGV-0113026_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0113026_21	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0113026_21	UniRef90	UniRef90_A0A357D2Y8	Helicase	NA
UHGV-0113026_21	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0113026_21	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0113026_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0113026_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0113026_21	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0113026_22	KOfam	K24451	zim; modification methylase	NA
UHGV-0113026_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0113026_22	UniRef90	UniRef90_UPI0018C6950D	site-specific DNA-methyltransferase	NA
UHGV-0113026_22	eggNOG-mapper	1089548.KI783301_gene2629	DNA methylase	NA
UHGV-0113026_22	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0113026_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113026_22	COG	COG0863	DNA modification methylase	NA
UHGV-0113026_22	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0113026_23	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0113026_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113026_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113026_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113026_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113026_24	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0113026_24	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0113026_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113026_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113026_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113026_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113026_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0113026_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113026_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113026_27	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0113026_27	eggNOG-mapper	936573.HMPREF1147_1316	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0113026_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113026_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113026_28	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0113026_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113026_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0113026_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113026_30	UniRef90	UniRef90_UPI000DA62951	HNH endonuclease	NA
UHGV-0113026_30	eggNOG-mapper	1033738.CAEP01000018_gene3665	HNH endonuclease	NA
UHGV-0113026_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0113026_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0113026_31	PHROG	phrog_1066	NA	unknown function
UHGV-0113026_31	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0113026_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0113026_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0113026_32	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0113026_32	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0113026_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0113026_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0113026_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0113026_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0113026_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0113026_33	UniRef90	UniRef90_UPI0018C64799	phage portal protein	NA
UHGV-0113026_33	eggNOG-mapper	1443122.Z958_05975	Portal protein	NA
UHGV-0113026_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0113026_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0113026_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0113026_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0113026_34	KOfam	K06904	NA	NA
UHGV-0113026_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0113026_34	UniRef90	UniRef90_UPI0018C73A25	HK97 family phage prohead protease	NA
UHGV-0113026_34	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0113026_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0113026_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0113026_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0113026_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0113026_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0113026_35	UniRef90	UniRef90_UPI0018C82054	phage major capsid protein	NA
UHGV-0113026_35	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0113026_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0113026_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0113026_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0113026_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0113026_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0113026_36	UniRef90	UniRef90_UPI000AEA599F	head-tail connector protein	NA
UHGV-0113026_36	eggNOG-mapper	1382315.JPOI01000001_gene279	Phage gp6-like head-tail connector protein	NA
UHGV-0113026_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0113026_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0113026_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0113026_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0113026_37	UniRef90	UniRef90_UPI0010329641	phage head closure protein	NA
UHGV-0113026_37	eggNOG-mapper	258594.RPA1897	Phage head-tail joining protein	NA
UHGV-0113026_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0113026_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0113026_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0113026_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0113026_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0113026_38	UniRef90	UniRef90_UPI0010328FDC	HK97 gp10 family phage protein	NA
UHGV-0113026_38	eggNOG-mapper	349521.HCH_04550	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0113026_39	PHROG	phrog_176	tail terminator	connector
UHGV-0113026_39	UniRef90	UniRef90_UPI001032C584	NA	NA
UHGV-0113026_39	eggNOG-mapper	1123288.SOV_2c03560	NA	NA
UHGV-0113026_39	Pfam	PF11367	NA	DUF3168
UHGV-0113026_39	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0113026_40	PHROG	phrog_1407	major tail protein	tail
UHGV-0113026_40	UniRef90	UniRef90_UPI001032D282	phage major tail protein, TP901-1 family	NA
UHGV-0113026_40	eggNOG-mapper	2754.EH55_13220	Phage tail tube protein	NA
UHGV-0113026_40	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0113026_40	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0113026_40	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0113026_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0113026_41	eggNOG-mapper	457415.HMPREF1006_00472	NA	NA
UHGV-0113026_42	PHROG	phrog_7377	NA	unknown function
UHGV-0113026_42	eggNOG-mapper	679201.HMPREF9334_00329	NA	NA
UHGV-0113026_43	PHROG	phrog_22443	NA	unknown function
UHGV-0113026_43	UniRef90	UniRef90_UPI001032C639	phage tail tape measure protein	NA
UHGV-0113026_43	eggNOG-mapper	568816.Acin_1228	tape measure	NA
UHGV-0113026_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0113026_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0113026_44	UniRef90	UniRef90_UPI0010329566	phage tail family protein	NA
UHGV-0113026_44	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-0113026_44	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0113026_45	eggNOG-mapper	568816.Acin_1226	NA	NA
UHGV-0113026_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0113026_46	PHROG	phrog_13336	NA	unknown function
UHGV-0113026_46	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0113026_47	UniRef90	UniRef90_A0A644VLF8	NA	NA
UHGV-0113026_47	Structural annotation	PF14301	NA	NA
UHGV-0113026_48	Structural annotation	PF12245, TIGR04183	NA	NA
UHGV-0113026_49	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0113026_49	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0113026_49	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0113026_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0113026_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0113026_50	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0113026_51	PHROG	phrog_199	holin	lysis
UHGV-0113026_51	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0113026_51	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0113026_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0113026_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0113026_52	PHROG	phrog_5867	endolysin	lysis
UHGV-0113026_52	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113026_52	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113026_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0113026_52	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0113026_52	Structural annotation	MF_04111	NA	NA