UHGV-0113324

Genome information

Genome length 42,928 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113324
vOTU ID	vOTU-002993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_303261
BioSample	SAMEA103958120
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.28
Jumbo phage	No

Genome content
Genome length	42,928 bps
GC content	57.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.77%
Average CDS length	678.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113324_1	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0113324_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113324_2	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0113324_2	UniRef90	UniRef90_G9YR83	DNA-binding helix-turn-helix protein	NA
UHGV-0113324_2	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0113324_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113324_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113324_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113324_4	Structural annotation	PF15188, NF010673	NA	NA
UHGV-0113324_6	Structural annotation	PF10548	NA	NA
UHGV-0113324_9	Structural annotation	PF05082	NA	NA
UHGV-0113324_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113324_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0113324_12	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0113324_12	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0113324_12	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0113324_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113324_12	COG	COG0863	DNA modification methylase	NA
UHGV-0113324_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0113324_14	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0113324_14	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0113324_14	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0113324_14	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0113324_14	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0113324_15	Pfam	PF04448	NA	DUF551
UHGV-0113324_16	PHROG	phrog_3136	NA	unknown function
UHGV-0113324_16	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0113324_16	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0113324_16	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0113324_17	PHROG	phrog_38832	NA	unknown function
UHGV-0113324_17	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0113324_17	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0113324_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113324_25	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0113324_25	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0113324_25	Pfam	PF06356	NA	DUF1064
UHGV-0113324_25	Structural annotation	PF06356	NA	NA
UHGV-0113324_27	Structural annotation	PF10013	NA	NA
UHGV-0113324_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0113324_29	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0113324_29	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0113324_29	Structural annotation	PF08271	NA	NA
UHGV-0113324_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113324_30	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0113324_30	UniRef90	UniRef90_A0A413FXK5	Methyltransferase	NA
UHGV-0113324_30	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0113324_30	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0113324_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113324_30	COG	COG0863	DNA modification methylase	NA
UHGV-0113324_30	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0113324_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0113324_31	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0113324_31	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0113324_32	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0113324_32	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0113324_32	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0113324_32	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0113324_32	Structural annotation	PF16677	NA	NA
UHGV-0113324_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113324_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0113324_33	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0113324_33	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0113324_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113324_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113324_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113324_34	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0113324_34	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0113324_34	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0113324_35	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0113324_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0113324_38	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0113324_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0113324_39	PHROG	phrog_13908	NA	unknown function
UHGV-0113324_39	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0113324_40	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0113324_40	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0113324_40	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0113324_40	Pfam	PF13252	NA	DUF4043
UHGV-0113324_40	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0113324_40	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0113324_42	PHROG	phrog_12105	NA	unknown function
UHGV-0113324_42	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0113324_43	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0113324_43	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0113324_44	PHROG	phrog_22978	NA	unknown function
UHGV-0113324_44	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0113324_44	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0113324_44	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0113324_44	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0113324_45	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0113324_46	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0113324_46	PHROG	phrog_819	tail protein	tail
UHGV-0113324_46	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0113324_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0113324_46	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0113324_47	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0113324_47	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0113324_47	Pfam	PF19789	NA	DUF6273
UHGV-0113324_47	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0113324_47	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0113324_48	PHROG	phrog_937	hemolysin	other
UHGV-0113324_48	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0113324_50	PHROG	phrog_918	NA	unknown function
UHGV-0113324_50	UniRef90	UniRef90_UPI000F79A1D5	NA	NA
UHGV-0113324_50	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0113324_50	Pfam	PF19791	NA	DUF6275
UHGV-0113324_50	Structural annotation	PF19791	NA	NA
UHGV-0113324_51	PHROG	phrog_13256	NA	unknown function
UHGV-0113324_51	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0113324_52	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0113324_52	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0113324_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113324_52	Structural annotation	NF033743	NA	NA
UHGV-0113324_53	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0113324_53	Structural annotation	PF10723	NA	NA
UHGV-0113324_57	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0113324_57	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0113324_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0113324_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0113324_58	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0113324_58	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0113324_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113324_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0113324_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0113324_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113324_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0113324_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113324_59	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA