UHGV-0113366

Genome information

Genome length 57,963 bps

CDS count 102

Completeness 100.00% (complete)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113366
vOTU ID	vOTU-045694
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_307864
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.05
Jumbo phage	No

Genome content
Genome length	57,963 bps
GC content	48.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	84.76%
Average CDS length	483.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113366_1	Pfam	PF19808	NA	DUF6291
UHGV-0113366_2	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0113366_2	Structural annotation	PF14354, TIGR03655, COG3478	NA	NA
UHGV-0113366_6	Structural annotation	NF041588	NA	NA
UHGV-0113366_15	Structural annotation	PF16677	NA	NA
UHGV-0113366_16	PHROG	phrog_7704	NA	unknown function
UHGV-0113366_16	UniRef90	UniRef90_UPI001495255A	NA	NA
UHGV-0113366_16	Pfam	PF04448	NA	DUF551
UHGV-0113366_18	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0113366_21	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0113366_22	PHROG	phrog_2715	NA	unknown function
UHGV-0113366_22	eggNOG-mapper	718252.FP2_16370	NA	NA
UHGV-0113366_22	Structural annotation	PF18406	NA	NA
UHGV-0113366_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113366_23	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0113366_23	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0113366_23	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0113366_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0113366_26	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0113366_26	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0113366_26	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0113366_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0113366_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113366_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113366_27	PHROG	phrog_4572	NA	unknown function
UHGV-0113366_27	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0113366_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113366_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113366_28	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0113366_28	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0113366_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113366_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113366_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113366_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113366_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0113366_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113366_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0113366_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0113366_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-0113366_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0113366_30	PHROG	phrog_38771	NA	unknown function
UHGV-0113366_31	eggNOG-mapper	272623.L157023	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0113366_31	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0113366_31	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-0113366_32	Structural annotation	PF14143	NA	NA
UHGV-0113366_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113366_33	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0113366_35	Structural annotation	TIGR03826	NA	NA
UHGV-0113366_36	Structural annotation	PF10922	NA	NA
UHGV-0113366_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113366_37	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0113366_37	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0113366_37	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0113366_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0113366_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113366_37	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0113366_37	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0113366_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113366_38	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0113366_38	eggNOG-mapper	411460.RUMTOR_00063	helix-turn-helix	NA
UHGV-0113366_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113366_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113366_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0113366_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113366_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113366_43	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0113366_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113366_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113366_43	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113366_44	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0113366_44	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0113366_44	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0113366_44	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0113366_44	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0113366_44	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0113366_44	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0113366_45	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0113366_45	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0113366_45	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0113366_45	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0113366_45	Pfam	PF13614	AAA domain	AAA_31
UHGV-0113366_45	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0113366_45	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0113366_46	Pfam	PF04448	NA	DUF551
UHGV-0113366_47	Structural annotation	PF07878	NA	NA
UHGV-0113366_48	Pfam	PF04448	NA	DUF551
UHGV-0113366_50	PHROG	phrog_7070	NA	unknown function
UHGV-0113366_50	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0113366_51	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0113366_52	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0113366_53	PHROG	phrog_16490	NA	unknown function
UHGV-0113366_53	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0113366_57	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113366_57	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0113366_58	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0113366_58	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0113366_58	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0113366_61	PHROG	phrog_15303	NA	unknown function
UHGV-0113366_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0113366_63	PHROG	phrog_291	endolysin	lysis
UHGV-0113366_63	UniRef90	UniRef90_A0A173W4B0	Autolytic lysozyme	NA
UHGV-0113366_63	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-0113366_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0113366_63	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0113366_63	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0113366_64	Structural annotation	NF040910	NA	NA
UHGV-0113366_66	PHROG	phrog_24267	NA	unknown function
UHGV-0113366_66	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0113366_66	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0113366_66	Structural annotation	COG4675	NA	NA
UHGV-0113366_67	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0113366_68	PHROG	phrog_18725	NA	unknown function
UHGV-0113366_68	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0113366_69	PHROG	phrog_13879	NA	unknown function
UHGV-0113366_69	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0113366_69	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0113366_69	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0113366_70	PHROG	phrog_1194	NA	unknown function
UHGV-0113366_70	Pfam	PF20458	NA	DUF6711
UHGV-0113366_70	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0113366_71	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0113366_71	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0113366_71	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0113366_72	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0113366_73	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0113366_73	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0113366_73	Pfam	PF16478	NA	DUF5055
UHGV-0113366_73	Structural annotation	PF16478	NA	NA
UHGV-0113366_74	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0113366_74	eggNOG-mapper	1449342.JQMR01000001_gene990	Phage tail tube protein, TTP	NA
UHGV-0113366_74	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0113366_75	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0113366_76	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0113366_77	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0113366_78	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0113366_78	Structural annotation	TIGR01560	NA	NA
UHGV-0113366_79	PHROG	phrog_29	major head protein	head and packaging
UHGV-0113366_79	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0113366_79	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0113366_79	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0113366_79	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0113366_82	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-0113366_83	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113366_83	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0113366_83	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113366_83	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113366_83	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0113366_85	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0113366_85	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0113366_85	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0113366_85	COG	COG5410	NA	NA
UHGV-0113366_85	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0113366_87	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0113366_87	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0113366_87	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0113366_87	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0113366_87	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113366_87	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113366_87	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0113366_88	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0113366_88	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0113366_88	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0113366_90	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0113366_91	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113366_91	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0113366_91	UniRef90	UniRef90_A0A6N8HZA6	AntA/AntB antirepressor	NA
UHGV-0113366_91	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-0113366_91	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0113366_91	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0113366_91	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0113366_91	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0113366_93	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0113366_96	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113366_96	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0113366_98	PHROG	phrog_1709	NA	unknown function
UHGV-0113366_98	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0113366_100	PHROG	phrog_419	NA	unknown function
UHGV-0113366_100	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0113366_100	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0113366_100	Structural annotation	PF14083	NA	NA
UHGV-0113366_101	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0113366_101	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0113366_101	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0113366_101	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0113366_101	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0113366_101	COG	COG0305	Replicative DNA helicase	NA
UHGV-0113366_101	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0113366_102	PHROG	phrog_15768	NA	unknown function
UHGV-0113366_102	eggNOG-mapper	402612.FP2295	NA	NA