UHGV-0113474

Genome information

Genome length 39,442 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113474
vOTU ID	vOTU-001232
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292913
BioSample	SAMEA4431957
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.96
Jumbo phage	No

Genome content
Genome length	39,442 bps
GC content	50.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.28%
Average CDS length	614.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113474_2	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0113474_3	PHROG	phrog_372	tail protein	tail
UHGV-0113474_3	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0113474_3	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0113474_3	Pfam	PF05895	NA	DUF859
UHGV-0113474_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0113474_3	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0113474_4	PHROG	phrog_3558	tail protein	tail
UHGV-0113474_4	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0113474_4	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0113474_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113474_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0113474_4	COG	COG4926	Phage-related protein	NA
UHGV-0113474_4	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0113474_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113474_5	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0113474_5	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0113474_5	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0113474_7	PHROG	phrog_9534	head protein	head and packaging
UHGV-0113474_7	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0113474_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0113474_8	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0113474_8	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0113474_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0113474_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0113474_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113474_9	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0113474_9	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0113474_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0113474_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0113474_10	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0113474_10	COG	COG5412	Phage-related protein	NA
UHGV-0113474_10	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0113474_11	PHROG	phrog_23464	NA	unknown function
UHGV-0113474_11	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0113474_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0113474_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0113474_13	PHROG	phrog_1021	NA	unknown function
UHGV-0113474_13	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0113474_14	PHROG	phrog_885	major tail protein	tail
UHGV-0113474_14	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0113474_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0113474_15	PHROG	phrog_957	head protein	head and packaging
UHGV-0113474_15	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0113474_15	Structural annotation	PF12691	NA	NA
UHGV-0113474_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0113474_16	UniRef90	UniRef90_A0A3E3E9Q7	HK97 gp10 family phage protein	NA
UHGV-0113474_16	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0113474_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113474_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0113474_17	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0113474_17	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0113474_17	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0113474_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0113474_18	PHROG	phrog_1236	head protein	head and packaging
UHGV-0113474_18	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0113474_18	Structural annotation	PF05135	NA	NA
UHGV-0113474_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-0113474_19	UniRef90	UniRef90_UPI001D09539E	N4-gp56 family major capsid protein	NA
UHGV-0113474_19	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0113474_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0113474_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0113474_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0113474_20	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-0113474_20	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0113474_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0113474_20	Structural annotation	PF06810	NA	NA
UHGV-0113474_21	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0113474_21	PHROG	phrog_14030	NA	unknown function
UHGV-0113474_21	UniRef90	UniRef90_A0A1Y4F727	NlpC/P60 domain-containing protein	NA
UHGV-0113474_21	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0113474_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0113474_21	Pfam	PF01476	LysM domain	LysM
UHGV-0113474_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0113474_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113474_21	Structural annotation	PF05382, PF01471, NF038080, NF033742, COG3409, COG1388	NA	NA
UHGV-0113474_22	PHROG	phrog_443	holin	lysis
UHGV-0113474_22	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0113474_22	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0113474_22	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0113474_22	Structural annotation	PF16945	NA	NA
UHGV-0113474_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0113474_24	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0113474_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0113474_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0113474_24	COG	COG2369	NA	NA
UHGV-0113474_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0113474_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113474_25	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-0113474_25	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113474_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113474_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0113474_27	PHROG	phrog_937	hemolysin	other
UHGV-0113474_27	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0113474_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113474_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0113474_28	UniRef90	UniRef90_U2RK66	Phage terminase, large subunit, PBSX family	NA
UHGV-0113474_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0113474_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0113474_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0113474_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113474_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113474_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0113474_29	PHROG	phrog_1233	NA	unknown function
UHGV-0113474_29	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0113474_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0113474_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0113474_31	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0113474_31	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0113474_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0113474_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0113474_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0113474_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113474_32	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0113474_32	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0113474_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0113474_32	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0113474_33	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0113474_36	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0113474_36	Structural annotation	PF18789	NA	NA
UHGV-0113474_38	PHROG	phrog_9804	NA	unknown function
UHGV-0113474_38	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0113474_38	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0113474_38	AcrCatalog	cluster_137185	NA	NA
UHGV-0113474_38	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0113474_38	Structural annotation	PF11417	NA	NA
UHGV-0113474_39	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113474_39	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0113474_39	eggNOG-mapper	1567014.A0A0A7RTS3_9VIRU	calcium ion binding	NA
UHGV-0113474_39	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0113474_39	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0113474_39	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0113474_40	PHROG	phrog_4973	NA	unknown function
UHGV-0113474_40	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0113474_40	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-0113474_40	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0113474_40	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0113474_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0113474_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0113474_42	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0113474_42	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0113474_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-0113474_42	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0113474_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0113474_42	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0113474_44	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113474_44	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0113474_44	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0113474_44	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0113474_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113474_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113474_45	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-0113474_45	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-0113474_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113474_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113474_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113474_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113474_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0113474_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0113474_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113474_46	UniRef90	UniRef90_A0A1C5PRW1	p33	NA
UHGV-0113474_46	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0113474_46	Pfam	PF03837	RecT family	RecT
UHGV-0113474_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0113474_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0113474_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0113474_47	PHROG	phrog_674	NA	unknown function
UHGV-0113474_47	UniRef90	UniRef90_UPI001C1259C1	NA	NA
UHGV-0113474_47	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0113474_47	Pfam	PF07083	NA	DUF1351
UHGV-0113474_47	Structural annotation	PF07083	NA	NA
UHGV-0113474_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113474_48	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0113474_48	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0113474_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0113474_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0113474_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0113474_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0113474_49	PHROG	phrog_13321	NA	unknown function
UHGV-0113474_49	UniRef90	UniRef90_A0A1H4E720	DNA repair photolyase	NA
UHGV-0113474_49	eggNOG-mapper	457421.CBFG_04971	NA	NA
UHGV-0113474_49	COG	COG1533	DNA repair photolyase	NA
UHGV-0113474_49	Structural annotation	PF20903, MF_00660, TIGR04470, COG0535	NA	NA
UHGV-0113474_50	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0113474_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0113474_50	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0113474_50	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0113474_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0113474_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0113474_50	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0113474_54	UniRef90	UniRef90_A0A3E2N8P7	NA	NA
UHGV-0113474_54	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0113474_54	Pfam	PF05339	NA	DUF739
UHGV-0113474_54	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0113474_54	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0113474_57	Structural annotation	MF_00273, NF001981	NA	NA
UHGV-0113474_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113474_58	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0113474_58	UniRef90	UniRef90_A0A2B7YNI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0113474_58	eggNOG-mapper	190304.FN2065	Helix-turn-helix XRE-family like proteins	NA
UHGV-0113474_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113474_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113474_58	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0113474_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113474_59	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113474_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0113474_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0113474_60	UniRef90	UniRef90_A0A0V8QI90	Recombinase domain-containing protein	NA
UHGV-0113474_60	eggNOG-mapper	483218.BACPEC_01184	Resolvase, N terminal domain	NA
UHGV-0113474_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113474_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-0113474_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113474_60	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA