UHGV-0113491

Genome information

Genome length 23,656 bps

CDS count 34

Completeness 59.33% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113491
vOTU ID	vOTU-031614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279499
BioSample	SAMEA3888894
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.49
Jumbo phage	No

Genome content
Genome length	23,656 bps
GC content	54.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	92.92%
Average CDS length	647.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113491_1	UniRef90	UniRef90_A0A1M2ZNM7	CopG family transcriptional regulator	NA
UHGV-0113491_1	eggNOG-mapper	1122918.KB907267_gene2	NA	NA
UHGV-0113491_1	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0113491_1	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0113491_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113491_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0113491_3	UniRef90	UniRef90_UPI001C128E30	phage antirepressor KilAC domain-containing protein	NA
UHGV-0113491_3	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0113491_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0113491_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113491_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0113491_3	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0113491_4	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0113491_4	UniRef90	UniRef90_A0A3F3JUE2	ParB domain-containing protein	NA
UHGV-0113491_4	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0113491_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0113491_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0113491_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0113491_5	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0113491_5	UniRef90	UniRef90_A0A6N7S662	ParB domain-containing protein	NA
UHGV-0113491_5	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0113491_5	Structural annotation	PF00331, MF_00168, NF040790, COG0069	NA	NA
UHGV-0113491_6	PHROG	phrog_27044	NA	unknown function
UHGV-0113491_6	UniRef90	UniRef90_A0A3F3JUD8	Citrulline cluster-linked protein	NA
UHGV-0113491_6	eggNOG-mapper	428126.CLOSPI_01525	NA	NA
UHGV-0113491_6	Pfam	PF06177	QueT transporter	QueT
UHGV-0113491_6	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0113491_6	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0113491_7	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0113491_7	UniRef90	UniRef90_A0A8F8QRC5	Transposase	NA
UHGV-0113491_7	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0113491_7	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0113491_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113491_8	PHROG	phrog_10250	NA	unknown function
UHGV-0113491_8	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0113491_8	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0113491_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0113491_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113491_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113491_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113491_9	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-0113491_9	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0113491_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113491_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113491_10	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0113491_10	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0113491_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113491_10	COG	COG2369	NA	NA
UHGV-0113491_10	Structural annotation	PF06152	NA	NA
UHGV-0113491_12	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0113491_12	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0113491_12	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0113491_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0113491_13	UniRef90	UniRef90_A0A1C6FYX1	Phage minor structural protein GP20	NA
UHGV-0113491_13	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0113491_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0113491_13	Structural annotation	PF06810	NA	NA
UHGV-0113491_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0113491_14	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0113491_14	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0113491_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0113491_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0113491_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0113491_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0113491_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113491_16	PHROG	phrog_3366	NA	unknown function
UHGV-0113491_16	Pfam	PF20536	NA	DUF6751
UHGV-0113491_16	Structural annotation	PF20536	NA	NA
UHGV-0113491_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113491_17	UniRef90	UniRef90_UPI000B10EF5E	minor capsid protein	NA
UHGV-0113491_17	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0113491_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0113491_17	Structural annotation	PF11114	NA	NA
UHGV-0113491_18	PHROG	phrog_3266	tail completion	connector
UHGV-0113491_18	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0113491_18	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0113491_18	Structural annotation	PF12691	NA	NA
UHGV-0113491_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0113491_19	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0113491_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0113491_20	PHROG	phrog_4450	NA	unknown function
UHGV-0113491_20	Structural annotation	PF20378	NA	NA
UHGV-0113491_21	PHROG	phrog_706	NA	unknown function
UHGV-0113491_21	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0113491_21	eggNOG-mapper	663278.Ethha_0101	Bacteriophage Gp15 protein	NA
UHGV-0113491_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0113491_21	Structural annotation	PF06854	NA	NA
UHGV-0113491_22	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0113491_22	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0113491_22	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0113491_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0113491_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0113491_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0113491_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0113491_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113491_23	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-0113491_23	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0113491_24	PHROG	phrog_18110	NA	unknown function
UHGV-0113491_24	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0113491_24	eggNOG-mapper	871584.D9ZNF0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0113491_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113491_24	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0113491_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0113491_26	PHROG	phrog_291	endolysin	lysis
UHGV-0113491_26	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0113491_26	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0113491_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0113491_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0113491_26	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0113491_27	PHROG	phrog_1863	NA	unknown function
UHGV-0113491_27	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0113491_28	PHROG	phrog_15303	NA	unknown function
UHGV-0113491_30	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0113491_32	PHROG	phrog_22984	NA	unknown function
UHGV-0113491_33	PHROG	phrog_16490	NA	unknown function
UHGV-0113491_34	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0113491_34	Structural annotation	PF18573, NF033147	NA	NA