UHGV-0113494

Genome information

Genome length 40,460 bps

CDS count 65

Completeness 99.24% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113494
vOTU ID	vOTU-012159
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279491
BioSample	SAMEA3888894
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.39
Jumbo phage	No

Genome content
Genome length	40,460 bps
GC content	50.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.09%
Average CDS length	570.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113494_1	PHROG	phrog_4433	NA	unknown function
UHGV-0113494_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0113494_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0113494_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0113494_3	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0113494_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0113494_4	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0113494_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113494_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0113494_4	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113494_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113494_5	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0113494_5	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0113494_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113494_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113494_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0113494_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113494_6	UniRef90	UniRef90_A0A2Z4QBH4	HTH cro/C1-type domain-containing protein	NA
UHGV-0113494_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113494_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113494_6	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0113494_7	eggNOG-mapper	1280664.AUIX01000005_gene2823	NA	NA
UHGV-0113494_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113494_9	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113494_10	KOfam	K14059	int; integrase	NA
UHGV-0113494_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0113494_10	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0113494_10	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0113494_10	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0113494_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113494_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0113494_10	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0113494_12	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0113494_13	Structural annotation	PF12510	NA	NA
UHGV-0113494_14	PHROG	phrog_20016	NA	unknown function
UHGV-0113494_14	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0113494_14	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0113494_15	PHROG	phrog_16490	NA	unknown function
UHGV-0113494_15	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0113494_16	PHROG	phrog_22984	NA	unknown function
UHGV-0113494_17	PHROG	phrog_21718	NA	unknown function
UHGV-0113494_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0113494_18	PHROG	phrog_3754	NA	unknown function
UHGV-0113494_18	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0113494_19	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0113494_19	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0113494_19	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0113494_20	PHROG	phrog_13256	NA	unknown function
UHGV-0113494_20	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0113494_21	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0113494_21	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0113494_22	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0113494_22	PHROG	phrog_7698	endolysin	lysis
UHGV-0113494_22	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-0113494_22	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0113494_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0113494_22	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0113494_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113494_22	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0113494_24	Structural annotation	PF10651	NA	NA
UHGV-0113494_25	PHROG	phrog_9534	head protein	head and packaging
UHGV-0113494_25	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0113494_25	Structural annotation	PF21567	NA	NA
UHGV-0113494_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0113494_26	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0113494_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0113494_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0113494_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113494_27	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0113494_27	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0113494_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0113494_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0113494_28	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0113494_28	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0113494_28	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0113494_28	COG	COG5412	Phage-related protein	NA
UHGV-0113494_28	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0113494_29	PHROG	phrog_20920	NA	unknown function
UHGV-0113494_29	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0113494_29	Structural annotation	PF16674	NA	NA
UHGV-0113494_31	PHROG	phrog_18646	NA	unknown function
UHGV-0113494_32	PHROG	phrog_885	major tail protein	tail
UHGV-0113494_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0113494_32	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0113494_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0113494_33	Structural annotation	PF11367	NA	NA
UHGV-0113494_34	PHROG	phrog_17977	NA	unknown function
UHGV-0113494_34	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0113494_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0113494_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0113494_36	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0113494_36	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0113494_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0113494_37	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0113494_37	Structural annotation	PF06810	NA	NA
UHGV-0113494_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0113494_38	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0113494_38	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0113494_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0113494_39	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0113494_39	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0113494_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113494_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0113494_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0113494_40	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0113494_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0113494_41	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0113494_41	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0113494_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0113494_41	COG	COG2369	NA	NA
UHGV-0113494_41	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0113494_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113494_42	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0113494_42	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113494_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113494_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0113494_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113494_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0113494_43	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0113494_43	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0113494_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0113494_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0113494_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113494_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113494_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0113494_45	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0113494_45	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0113494_45	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0113494_45	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0113494_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0113494_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0113494_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113494_45	COG	COG0863	DNA modification methylase	NA
UHGV-0113494_45	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0113494_46	PHROG	phrog_11237	NA	unknown function
UHGV-0113494_46	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0113494_46	Structural annotation	NF009167	NA	NA
UHGV-0113494_49	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113494_49	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0113494_49	eggNOG-mapper	1291050.JAGE01000001_gene468	endonuclease activity	NA
UHGV-0113494_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0113494_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0113494_49	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0113494_50	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0113494_55	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113494_55	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0113494_55	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-0113494_55	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0113494_55	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0113494_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113494_55	COG	COG0863	DNA modification methylase	NA
UHGV-0113494_55	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0113494_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113494_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113494_56	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0113494_56	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0113494_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113494_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113494_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0113494_57	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0113494_58	PHROG	phrog_16304	NA	unknown function
UHGV-0113494_58	Pfam	PF19808	NA	DUF6291
UHGV-0113494_58	Structural annotation	PF19808	NA	NA
UHGV-0113494_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113494_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113494_59	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-0113494_59	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0113494_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113494_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113494_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113494_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113494_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0113494_60	PHROG	phrog_7566	NA	unknown function
UHGV-0113494_60	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0113494_61	PHROG	phrog_1389	NA	unknown function
UHGV-0113494_61	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0113494_61	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0113494_62	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113494_62	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-0113494_62	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0113494_62	Pfam	PF06378	NA	DUF1071
UHGV-0113494_62	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0113494_65	PHROG	phrog_27197	NA	unknown function
UHGV-0113494_65	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0113494_65	COG	COG5164	Transcription elongation factor SPT5	NA