UHGV-0113545

Genome information

Genome length 27,138 bps

CDS count 43

Completeness 68.14% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113545
vOTU ID	vOTU-025181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296559
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.94
Jumbo phage	No

Genome content
Genome length	27,138 bps
GC content	47.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.22%
Average CDS length	585.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113545_1	PHROG	phrog_26165	NA	unknown function
UHGV-0113545_5	eggNOG-mapper	610130.Closa_1382	NA	NA
UHGV-0113545_5	Structural annotation	PF21744, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0113545_9	PHROG	phrog_32198	NA	unknown function
UHGV-0113545_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0113545_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0113545_12	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-0113545_12	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0113545_12	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0113545_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113545_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0113545_12	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0113545_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113545_13	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0113545_13	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0113545_13	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0113545_13	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0113545_14	PHROG	phrog_2412	NA	unknown function
UHGV-0113545_14	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0113545_14	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0113545_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113545_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0113545_15	UniRef90	UniRef90_A0A8B2WZC5	PBSX family phage terminase large subunit	NA
UHGV-0113545_15	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0113545_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0113545_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0113545_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113545_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113545_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0113545_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113545_16	UniRef90	UniRef90_A0A8B2X328	Phage portal protein	NA
UHGV-0113545_16	eggNOG-mapper	1321782.HMPREF1986_02262	NA	NA
UHGV-0113545_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113545_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113545_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113545_17	UniRef90	UniRef90_A0A8B2X245	Minor capsid protein	NA
UHGV-0113545_17	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0113545_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113545_17	COG	COG2369	NA	NA
UHGV-0113545_17	Structural annotation	PF06152	NA	NA
UHGV-0113545_18	KOfam	K07584	NA	NA
UHGV-0113545_18	PHROG	phrog_4478	peptidase	other
UHGV-0113545_18	UniRef90	UniRef90_A0A8B2WXT7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0113545_18	eggNOG-mapper	1235792.C808_05366	Pfam:Peptidase_C108	NA
UHGV-0113545_18	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0113545_18	COG	COG2868	NA	NA
UHGV-0113545_18	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0113545_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0113545_19	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0113545_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0113545_20	UniRef90	UniRef90_A0A8B2X5T9	Phage major capsid protein	NA
UHGV-0113545_20	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0113545_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0113545_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0113545_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0113545_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0113545_21	UniRef90	UniRef90_A0A173UTP1	Head fiber protein	NA
UHGV-0113545_21	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0113545_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113545_22	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0113545_23	PHROG	phrog_3366	NA	unknown function
UHGV-0113545_23	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0113545_23	Pfam	PF20536	NA	DUF6751
UHGV-0113545_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113545_24	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0113545_24	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0113545_24	Structural annotation	PF11114	NA	NA
UHGV-0113545_25	PHROG	phrog_3266	tail completion	connector
UHGV-0113545_25	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0113545_25	Structural annotation	PF12691	NA	NA
UHGV-0113545_26	PHROG	phrog_3099	NA	unknown function
UHGV-0113545_26	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0113545_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0113545_26	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0113545_27	PHROG	phrog_4450	NA	unknown function
UHGV-0113545_27	UniRef90	UniRef90_A0A8J6M013	AP endonuclease	NA
UHGV-0113545_27	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0113545_27	Pfam	PF20378	NA	DUF6673
UHGV-0113545_27	Structural annotation	PF20378	NA	NA
UHGV-0113545_28	PHROG	phrog_706	NA	unknown function
UHGV-0113545_28	UniRef90	UniRef90_UPI001C8DC2CB	Gp15 family bacteriophage protein	NA
UHGV-0113545_28	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0113545_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0113545_28	Structural annotation	PF06854	NA	NA
UHGV-0113545_29	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0113545_29	UniRef90	UniRef90_A0A2T3F007	TMP_3 domain-containing protein	NA
UHGV-0113545_29	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0113545_29	COG	COG1511	NA	NA
UHGV-0113545_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113545_30	UniRef90	UniRef90_A0A8B2WXS9	MtfA protein	NA
UHGV-0113545_30	eggNOG-mapper	1235792.C808_05349	NA	NA
UHGV-0113545_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0113545_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0113545_30	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0113545_31	PHROG	phrog_3558	tail protein	tail
UHGV-0113545_31	UniRef90	UniRef90_A0A8B2X4R3	Prophage_tail domain-containing protein	NA
UHGV-0113545_31	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0113545_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113545_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0113545_31	COG	COG4926	Phage-related protein	NA
UHGV-0113545_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0113545_33	Structural annotation	PF02185	NA	NA
UHGV-0113545_35	UniRef90	UniRef90_A0A412ZBR4	H_lectin domain-containing protein	NA
UHGV-0113545_35	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0113545_38	PHROG	phrog_12931	NA	unknown function
UHGV-0113545_38	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0113545_39	UniRef90	UniRef90_A0A2T3F3A7	XkdX family protein	NA
UHGV-0113545_39	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0113545_39	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0113545_40	PHROG	phrog_199	holin	lysis
UHGV-0113545_40	UniRef90	UniRef90_UPI001178BDD2	phage holin family protein	NA
UHGV-0113545_40	eggNOG-mapper	411902.CLOBOL_00117	Bacteriophage holin family	NA
UHGV-0113545_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0113545_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0113545_40	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0113545_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0113545_41	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-0113545_41	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0113545_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113545_41	Structural annotation	PF19127, PF00877, NF033742, COG0791	NA	NA
UHGV-0113545_42	PHROG	phrog_5881	NA	unknown function
UHGV-0113545_42	Structural annotation	PF14524, TIGR04204	NA	NA