UHGV-0113571

Genome information

Genome length 43,363 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113571
vOTU ID	vOTU-013630
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298733
BioSample	SAMEA4431940
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.51
Jumbo phage	No

Genome content
Genome length	43,363 bps
GC content	54.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	92.24%
Average CDS length	530.29 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113571_1	PHROG	phrog_4433	NA	unknown function
UHGV-0113571_1	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0113571_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0113571_2	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0113571_3	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0113571_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0113571_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113571_4	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0113571_4	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0113571_4	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0113571_4	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0113571_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113571_4	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0113571_4	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0113571_4	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0113571_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113571_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0113571_7	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0113571_7	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0113571_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0113571_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113571_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0113571_8	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0113571_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0113571_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113571_10	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0113571_10	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0113571_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113571_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113571_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0113571_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113571_11	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0113571_11	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0113571_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113571_11	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113571_12	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0113571_15	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0113571_15	UniRef90	UniRef90_UPI001876A0BB	Ltp family lipoprotein	NA
UHGV-0113571_15	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0113571_15	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0113571_15	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0113571_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0113571_15	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0113571_18	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0113571_18	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0113571_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113571_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113571_18	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0113571_19	KOfam	K14059	int; integrase	NA
UHGV-0113571_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0113571_19	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0113571_19	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0113571_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113571_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0113571_19	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0113571_21	Structural annotation	PF12510	NA	NA
UHGV-0113571_22	PHROG	phrog_20016	NA	unknown function
UHGV-0113571_22	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0113571_22	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0113571_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0113571_23	PHROG	phrog_16490	NA	unknown function
UHGV-0113571_23	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0113571_24	PHROG	phrog_22984	NA	unknown function
UHGV-0113571_25	PHROG	phrog_21718	NA	unknown function
UHGV-0113571_25	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0113571_26	PHROG	phrog_3754	NA	unknown function
UHGV-0113571_26	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0113571_28	PHROG	phrog_25567	NA	unknown function
UHGV-0113571_28	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0113571_28	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0113571_29	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113571_29	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0113571_29	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0113571_29	Pfam	PF00847	AP2 domain	AP2
UHGV-0113571_29	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0113571_30	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0113571_33	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0113571_33	PHROG	phrog_8745	tail fiber protein	tail
UHGV-0113571_33	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0113571_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0113571_33	Structural annotation	PF10651	NA	NA
UHGV-0113571_34	PHROG	phrog_15303	NA	unknown function
UHGV-0113571_36	KOfam	K07273	acm; lysozyme	NA
UHGV-0113571_36	PHROG	phrog_291	endolysin	lysis
UHGV-0113571_36	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0113571_36	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0113571_36	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0113571_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0113571_36	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0113571_37	PHROG	phrog_2310	NA	unknown function
UHGV-0113571_38	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0113571_38	COG	COG5492	NA	NA
UHGV-0113571_39	PHROG	phrog_3558	tail protein	tail
UHGV-0113571_39	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0113571_39	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0113571_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113571_39	COG	COG4926	Phage-related protein	NA
UHGV-0113571_39	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0113571_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113571_40	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0113571_40	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0113571_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0113571_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0113571_41	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0113571_41	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0113571_41	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0113571_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0113571_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0113571_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0113571_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0113571_44	PHROG	phrog_885	major tail protein	tail
UHGV-0113571_44	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0113571_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0113571_45	Structural annotation	PF13554	NA	NA
UHGV-0113571_46	PHROG	phrog_17977	NA	unknown function
UHGV-0113571_46	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0113571_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0113571_48	PHROG	phrog_544	major head protein	head and packaging
UHGV-0113571_48	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0113571_48	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0113571_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0113571_50	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0113571_50	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0113571_50	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0113571_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0113571_51	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0113571_51	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0113571_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113571_51	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0113571_51	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0113571_54	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0113571_54	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0113571_54	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0113571_54	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0113571_54	COG	COG2369	NA	NA
UHGV-0113571_54	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0113571_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113571_55	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0113571_55	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113571_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113571_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0113571_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113571_56	PHROG	phrog_10250	NA	unknown function
UHGV-0113571_56	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0113571_56	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0113571_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113571_56	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0113571_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113571_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113571_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113571_57	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0113571_57	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0113571_57	Structural annotation	PF04218	NA	NA
UHGV-0113571_59	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0113571_60	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0113571_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113571_61	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113571_61	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0113571_61	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0113571_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113571_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113571_61	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0113571_62	PHROG	phrog_3136	NA	unknown function
UHGV-0113571_62	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0113571_62	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0113571_62	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0113571_62	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0113571_63	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0113571_63	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0113571_63	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0113571_63	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0113571_65	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0113571_66	PHROG	phrog_15768	NA	unknown function
UHGV-0113571_66	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0113571_66	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0113571_66	Pfam	PF19808	NA	DUF6291
UHGV-0113571_66	Structural annotation	PF19808	NA	NA
UHGV-0113571_68	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113571_68	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113571_68	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0113571_68	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0113571_68	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113571_68	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113571_68	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113571_68	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113571_68	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0113571_69	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113571_69	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0113571_69	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0113571_69	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0113571_71	Structural annotation	PF14120	NA	NA
UHGV-0113571_73	Structural annotation	PF09537	NA	NA
UHGV-0113571_74	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0113571_75	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0113571_76	PHROG	phrog_27197	NA	unknown function
UHGV-0113571_76	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0113571_76	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0113571_76	Structural annotation	NF007410	NA	NA