UHGV-0113575

Genome information

Genome length 36,103 bps

CDS count 54

Completeness 88.72% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113575
vOTU ID	vOTU-040069
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298739
BioSample	SAMEA4431940
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.39
Jumbo phage	No

Genome content
Genome length	36,103 bps
GC content	41.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.03%
Average CDS length	625.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113575_1	UniRef90	UniRef90_A0A3C1CWK4	SpoVT-AbrB domain-containing protein	NA
UHGV-0113575_1	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0113575_1	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0113575_1	Structural annotation	PF15937, TIGR01439, COG2002	NA	NA
UHGV-0113575_3	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0113575_3	PHROG	phrog_1996	DNA methyltransferase	other
UHGV-0113575_3	UniRef90	UniRef90_A0A2N0UQT9	Modification methylase DpnIIA	NA
UHGV-0113575_3	eggNOG-mapper	1449126.JQKL01000007_gene637	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0113575_3	PADLOC	MTase_II_00033	Type II methyltransferase	RM
UHGV-0113575_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0113575_3	COG	COG0338	DNA-adenine methylase	NA
UHGV-0113575_3	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0113575_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0113575_4	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0113575_4	UniRef90	UniRef90_A0A412L547	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0113575_4	eggNOG-mapper	1160721.RBI_I00268	NA	NA
UHGV-0113575_4	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0113575_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113575_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113575_5	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0113575_5	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0113575_5	UniRef90	UniRef90_A0A2N0UQP5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0113575_5	eggNOG-mapper	697329.Rumal_1386	NA	NA
UHGV-0113575_5	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0113575_5	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113575_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113575_5	Structural annotation	PF13679, MF_00607, TIGR03587, COG0742	NA	NA
UHGV-0113575_6	PHROG	phrog_3782	NA	unknown function
UHGV-0113575_6	UniRef90	UniRef90_A0A3D2QWM1	NA	NA
UHGV-0113575_6	eggNOG-mapper	411902.CLOBOL_04119	NA	NA
UHGV-0113575_6	Pfam	PF14192	NA	DUF4314
UHGV-0113575_6	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0113575_6	Structural annotation	PF14192, MF_00754, NF003019	NA	NA
UHGV-0113575_8	UniRef90	UniRef90_A0A415Z641	Transposase	NA
UHGV-0113575_8	eggNOG-mapper	1121115.AXVN01000050_gene3086	NA	NA
UHGV-0113575_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113575_13	PHROG	phrog_18293	methyltransferase	other
UHGV-0113575_13	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-0113575_13	eggNOG-mapper	411483.FAEPRAA2165_03404	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0113575_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0113575_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113575_13	COG	COG0863	DNA modification methylase	NA
UHGV-0113575_13	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0113575_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0113575_14	PHROG	phrog_20388	endolysin	lysis
UHGV-0113575_14	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113575_14	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113575_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0113575_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0113575_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113575_14	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0113575_15	PHROG	phrog_881	holin	lysis
UHGV-0113575_15	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0113575_15	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0113575_15	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0113575_15	Structural annotation	PF16938	NA	NA
UHGV-0113575_16	PHROG	phrog_1009	NA	unknown function
UHGV-0113575_16	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0113575_16	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0113575_18	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-0113575_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0113575_19	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0113575_19	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0113575_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113575_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0113575_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0113575_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113575_20	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0113575_20	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0113575_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0113575_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0113575_21	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0113575_21	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0113575_21	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0113575_21	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0113575_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0113575_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0113575_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0113575_22	Structural annotation	PF11836	NA	NA
UHGV-0113575_23	PHROG	phrog_88	major tail protein	tail
UHGV-0113575_23	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0113575_23	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0113575_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0113575_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0113575_24	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0113575_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113575_24	Structural annotation	TIGR01725	NA	NA
UHGV-0113575_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0113575_26	PHROG	phrog_19734	NA	unknown function
UHGV-0113575_26	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0113575_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0113575_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0113575_27	PHROG	phrog_749	NA	unknown function
UHGV-0113575_27	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0113575_27	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0113575_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0113575_28	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0113575_28	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0113575_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0113575_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0113575_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0113575_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0113575_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0113575_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0113575_29	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0113575_29	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0113575_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0113575_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0113575_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0113575_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0113575_30	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0113575_30	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0113575_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0113575_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0113575_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0113575_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0113575_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113575_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0113575_31	UniRef90	UniRef90_A0A7X8ML29	Methyltransferase	NA
UHGV-0113575_31	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0113575_31	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0113575_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113575_31	COG	COG0863	DNA modification methylase	NA
UHGV-0113575_31	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0113575_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0113575_32	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0113575_32	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0113575_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0113575_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0113575_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0113575_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0113575_33	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0113575_33	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0113575_33	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0113575_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0113575_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0113575_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113575_34	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0113575_34	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0113575_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0113575_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0113575_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113575_35	UniRef90	UniRef90_A0A412ULX1	XRE family transcriptional regulator	NA
UHGV-0113575_35	eggNOG-mapper	226185.EF_1277	Helix-turn-helix XRE-family like proteins	NA
UHGV-0113575_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113575_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113575_35	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0113575_36	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0113575_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0113575_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113575_38	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0113575_38	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0113575_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113575_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113575_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0113575_39	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0113575_39	Structural annotation	PF15597	NA	NA
UHGV-0113575_42	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0113575_44	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0113575_45	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113575_45	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0113575_45	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0113575_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113575_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113575_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0113575_46	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0113575_46	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0113575_46	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0113575_46	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0113575_46	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0113575_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-0113575_46	COG	COG3598	RecA-family ATPase	NA
UHGV-0113575_46	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0113575_47	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0113575_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0113575_47	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0113575_47	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0113575_47	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0113575_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0113575_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0113575_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0113575_47	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0113575_48	PHROG	phrog_2698	NA	unknown function
UHGV-0113575_48	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0113575_48	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0113575_48	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0113575_49	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113575_49	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0113575_49	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0113575_49	Pfam	PF13479	AAA domain	AAA_24
UHGV-0113575_49	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0113575_51	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0113575_51	PHROG	phrog_1499	NA	unknown function
UHGV-0113575_51	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0113575_51	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0113575_51	Pfam	PF13476	AAA domain	AAA_23
UHGV-0113575_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0113575_51	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0113575_53	PHROG	phrog_6058	NA	unknown function
UHGV-0113575_53	Structural annotation	NF033787	NA	NA