UHGV-0113586

Genome information

Genome length 54,263 bps

CDS count 85

Completeness 91.97% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113586
vOTU ID	vOTU-077481
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308399
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.09
Jumbo phage	No

Genome content
Genome length	54,263 bps
GC content	37.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	89.04%
Average CDS length	570.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113586_2	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0113586_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0113586_7	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0113586_7	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0113586_7	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0113586_7	COG	COG5410	NA	NA
UHGV-0113586_7	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0113586_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113586_8	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0113586_8	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0113586_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0113586_8	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0113586_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113586_9	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0113586_9	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113586_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113586_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0113586_10	PHROG	phrog_19695	NA	unknown function
UHGV-0113586_10	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0113586_10	Structural annotation	PF19714	NA	NA
UHGV-0113586_11	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0113586_11	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0113586_11	Structural annotation	PF10651, PF20328	NA	NA
UHGV-0113586_12	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0113586_13	PHROG	phrog_909	major head protein	head and packaging
UHGV-0113586_13	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0113586_13	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0113586_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-0113586_14	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0113586_14	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0113586_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0113586_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0113586_15	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0113586_15	Structural annotation	PF21169	NA	NA
UHGV-0113586_16	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0113586_17	PHROG	phrog_4105	NA	unknown function
UHGV-0113586_17	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-0113586_18	PHROG	phrog_1129	holin	lysis
UHGV-0113586_18	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0113586_18	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0113586_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0113586_18	Structural annotation	PF06946	NA	NA
UHGV-0113586_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0113586_20	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0113586_20	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0113586_20	AcrCatalog	cluster_24841	NA	NA
UHGV-0113586_21	UniRef90	UniRef90_A0A1S8TG61	NA	NA
UHGV-0113586_21	eggNOG-mapper	1414720.CBYM010000002_gene549	NA	NA
UHGV-0113586_21	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0113586_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113586_22	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0113586_22	eggNOG-mapper	1159488.SEQMU2_01825	NA	NA
UHGV-0113586_23	Structural annotation	PF05657	NA	NA
UHGV-0113586_24	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0113586_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0113586_25	PHROG	phrog_36112	NA	unknown function
UHGV-0113586_25	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0113586_25	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0113586_25	Structural annotation	PF16478	NA	NA
UHGV-0113586_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0113586_27	UniRef90	UniRef90_A0A1C5WKI4	Phage-related protein	NA
UHGV-0113586_27	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0113586_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0113586_28	PHROG	phrog_1194	NA	unknown function
UHGV-0113586_28	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0113586_28	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0113586_29	PHROG	phrog_6616	tail protein	tail
UHGV-0113586_29	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0113586_29	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0113586_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0113586_30	PHROG	phrog_435	endolysin	lysis
UHGV-0113586_30	UniRef90	UniRef90_UPI000D659E9B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113586_30	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0113586_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0113586_30	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0113586_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0113586_30	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0113586_31	PHROG	phrog_32721	NA	unknown function
UHGV-0113586_31	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0113586_31	eggNOG-mapper	1391646.AVSU01000065_gene2762	NA	NA
UHGV-0113586_31	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0113586_33	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0113586_33	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0113586_33	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0113586_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113586_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113586_33	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113586_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113586_34	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0113586_34	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0113586_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113586_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113586_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113586_37	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0113586_37	UniRef90	UniRef90_UPI001BED9A05	ORF6C domain-containing protein	NA
UHGV-0113586_37	eggNOG-mapper	1423758.BN55_04355	BRO family, N-terminal domain	NA
UHGV-0113586_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0113586_37	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0113586_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0113586_37	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0113586_39	PHROG	phrog_4292	NA	unknown function
UHGV-0113586_39	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0113586_42	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0113586_42	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113586_42	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0113586_42	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0113586_42	Pfam	PF13476	AAA domain	AAA_23
UHGV-0113586_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0113586_42	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0113586_44	PHROG	phrog_9958	NA	unknown function
UHGV-0113586_44	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0113586_44	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0113586_44	Pfam	PF19789	NA	DUF6273
UHGV-0113586_44	Structural annotation	PF19789	NA	NA
UHGV-0113586_45	PHROG	phrog_9958	NA	unknown function
UHGV-0113586_45	UniRef90	UniRef90_A0A3E5ENL3	NA	NA
UHGV-0113586_45	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0113586_45	Pfam	PF19789	NA	DUF6273
UHGV-0113586_45	Structural annotation	PF19789	NA	NA
UHGV-0113586_46	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0113586_46	UniRef90	UniRef90_A0A4Q5C8K1	Four helix bundle protein	NA
UHGV-0113586_46	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0113586_46	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0113586_46	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0113586_47	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0113586_47	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0113586_47	UniRef90	UniRef90_A0A4Q5C974	Reverse transcriptase domain-containing protein	NA
UHGV-0113586_47	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0113586_47	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0113586_47	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0113586_47	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0113586_47	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0113586_48	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113586_48	UniRef90	UniRef90_UPI001A8D427A	recombinase RecT	NA
UHGV-0113586_48	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0113586_48	Pfam	PF03837	RecT family	RecT
UHGV-0113586_48	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0113586_49	PHROG	phrog_25456	NA	unknown function
UHGV-0113586_50	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113586_50	UniRef90	UniRef90_Q4Z920	ORF076	NA
UHGV-0113586_50	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0113586_50	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0113586_51	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0113586_51	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0113586_51	UniRef90	UniRef90_A0A416G2C4	MBL fold metallo-hydrolase	NA
UHGV-0113586_51	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0113586_51	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0113586_51	dbAPIS	APIS058	NA	NA
UHGV-0113586_51	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0113586_51	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0113586_55	PHROG	phrog_9348	NA	unknown function
UHGV-0113586_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113586_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113586_56	UniRef90	UniRef90_A0A6L9HLK2	Single-stranded DNA-binding protein	NA
UHGV-0113586_56	eggNOG-mapper	553973.CLOHYLEM_07405	Single-stranded DNA-binding protein	NA
UHGV-0113586_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113586_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113586_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113586_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113586_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0113586_60	PHROG	phrog_21026	NA	unknown function
UHGV-0113586_61	Structural annotation	PF13783, MF_01888, NF008362, COG5515	NA	NA
UHGV-0113586_62	PHROG	phrog_19106	NA	unknown function
UHGV-0113586_62	UniRef90	UniRef90_R7BHG7	GIY-YIG domain-containing protein	NA
UHGV-0113586_62	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0113586_62	Structural annotation	TIGR01453	NA	NA
UHGV-0113586_65	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0113586_65	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0113586_65	AcrCatalog	cluster_47493	NA	NA
UHGV-0113586_65	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0113586_66	Structural annotation	PF05641	NA	NA
UHGV-0113586_69	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113586_69	eggNOG-mapper	565653.EGBG_01946	DnaD domain protein	NA
UHGV-0113586_69	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0113586_69	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0113586_70	PHROG	phrog_9804	NA	unknown function
UHGV-0113586_70	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0113586_70	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0113586_70	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0113586_70	Structural annotation	PF11417	NA	NA
UHGV-0113586_73	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0113586_73	UniRef90	UniRef90_A0A3R6LNM2	Helix-turn-helix domain-containing protein	NA
UHGV-0113586_73	eggNOG-mapper	411483.FAEPRAA2165_01502	Excisionase from transposon Tn916	NA
UHGV-0113586_73	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0113586_73	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0113586_73	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0113586_74	KOfam	K14059	int; integrase	NA
UHGV-0113586_74	PHROG	phrog_1	integrase	integration and excision
UHGV-0113586_74	UniRef90	UniRef90_A0A415G2Q6	Site-specific integrase	NA
UHGV-0113586_74	eggNOG-mapper	1121296.JONJ01000003_gene824	Phage integrase family	NA
UHGV-0113586_74	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0113586_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113586_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0113586_74	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0113586_75	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0113586_75	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0113586_75	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0113586_77	PHROG	phrog_21718	NA	unknown function
UHGV-0113586_77	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0113586_77	Structural annotation	NF033819	NA	NA
UHGV-0113586_78	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0113586_79	PHROG	phrog_16490	NA	unknown function
UHGV-0113586_79	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0113586_80	PHROG	phrog_20016	NA	unknown function
UHGV-0113586_80	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0113586_80	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0113586_80	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0113586_81	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0113586_82	PHROG	phrog_1233	NA	unknown function
UHGV-0113586_82	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0113586_82	Structural annotation	PF13058	NA	NA