UHGV-0113593

Genome information

Genome length 48,342 bps

CDS count 80

Completeness 94.84% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113593
vOTU ID	vOTU-013291
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_274828
BioSample	SAMEA3879577
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.55
Jumbo phage	No

Genome content
Genome length	48,342 bps
GC content	32.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	89.72%
Average CDS length	545.44 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113593_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0113593_1	PHROG	phrog_3393	endolysin	lysis
UHGV-0113593_1	UniRef90	UniRef90_A0A3E4LXG7	NlpC/P60 domain-containing protein	NA
UHGV-0113593_1	eggNOG-mapper	665950.HMPREF1025_02511	Ami_2	NA
UHGV-0113593_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0113593_1	Structural annotation	PF05382, NF033743, COG5492, COG0791	NA	NA
UHGV-0113593_2	PHROG	phrog_443	holin	lysis
UHGV-0113593_2	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-0113593_2	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0113593_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0113593_2	Structural annotation	PF16945	NA	NA
UHGV-0113593_3	PHROG	phrog_1009	NA	unknown function
UHGV-0113593_4	PHROG	phrog_19695	NA	unknown function
UHGV-0113593_4	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0113593_4	Structural annotation	PF19714	NA	NA
UHGV-0113593_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113593_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0113593_6	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0113593_6	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0113593_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0113593_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0113593_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113593_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113593_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0113593_11	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0113593_11	eggNOG-mapper	1236514.BAKL01000015_gene1638	NA	NA
UHGV-0113593_11	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0113593_11	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0113593_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0113593_12	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0113593_12	UniRef90	UniRef90_A0A4D6A7C4	DNA modification methylase	NA
UHGV-0113593_12	eggNOG-mapper	1476902.A0A067ZI74_9CAUD	N-methyltransferase activity	NA
UHGV-0113593_12	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0113593_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0113593_12	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0113593_13	Structural annotation	PF16857, NF010188, COG2157	NA	NA
UHGV-0113593_14	PHROG	phrog_2412	NA	unknown function
UHGV-0113593_14	UniRef90	UniRef90_A0A6Z7A1E4	Stress-induced protein	NA
UHGV-0113593_17	Structural annotation	PF14084	NA	NA
UHGV-0113593_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0113593_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0113593_18	UniRef90	UniRef90_R6NL32	Ribonuclease H	NA
UHGV-0113593_18	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0113593_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0113593_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0113593_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0113593_19	Structural annotation	PF10922	NA	NA
UHGV-0113593_22	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0113593_23	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113593_23	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0113593_29	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0113593_29	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-0113593_29	eggNOG-mapper	1329516.JPST01000005_gene1322	NAD-dependent DNA ligase adenylation domain	NA
UHGV-0113593_29	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0113593_32	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113593_32	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0113593_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0113593_33	PHROG	phrog_5696	NA	unknown function
UHGV-0113593_33	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-0113593_33	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0113593_33	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0113593_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0113593_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0113593_33	Structural annotation	COG0286	NA	NA
UHGV-0113593_34	Structural annotation	PF18358	NA	NA
UHGV-0113593_36	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0113593_36	UniRef90	UniRef90_A0A5D3IBF8	PDDEXK_1 domain-containing protein	NA
UHGV-0113593_36	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0113593_36	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-0113593_36	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0113593_36	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0113593_37	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0113593_37	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0113593_37	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0113593_37	eggNOG-mapper	1172190.M947_08195	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0113593_37	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0113593_37	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0113593_37	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0113593_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-0113593_38	eggNOG-mapper	889876.E2GLY2_9CAUD	NA	NA
UHGV-0113593_38	Pfam	PF11753	NA	DUF3310
UHGV-0113593_39	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0113593_39	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0113593_39	eggNOG-mapper	1150600.ADIARSV_3942	DNA polymerase III alpha subunit	NA
UHGV-0113593_39	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0113593_39	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0113593_40	PHROG	phrog_4645	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113593_40	eggNOG-mapper	1321778.HMPREF1982_01008	Participates in initiation and elongation during chromosome replication	NA
UHGV-0113593_40	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0113593_42	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0113593_42	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0113593_42	UniRef90	UniRef90_A0A258C740	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0113593_42	eggNOG-mapper	1182590.BN5_01247	DNA polymerase	NA
UHGV-0113593_42	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0113593_42	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0113593_42	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0113593_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113593_43	UniRef90	UniRef90_C5WGV2	Putative endodeoxyribonuclease	NA
UHGV-0113593_43	eggNOG-mapper	1589270.A0A0B5A545_9CAUD	HNH endonuclease	NA
UHGV-0113593_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0113593_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0113593_43	Structural annotation	PF07463, PF20987	NA	NA
UHGV-0113593_44	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0113593_44	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0113593_44	UniRef90	UniRef90_A0A355TT49	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0113593_44	eggNOG-mapper	1443122.Z958_03285	DNA polymerase	NA
UHGV-0113593_44	Pfam	PF02811	PHP domain	PHP
UHGV-0113593_44	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0113593_44	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0113593_44	Structural annotation	PF02811, PF07733, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0113593_46	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113593_46	Structural annotation	PF08804	NA	NA
UHGV-0113593_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0113593_48	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0113593_48	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0113593_48	eggNOG-mapper	649638.Trad_0624	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0113593_48	PADLOC	drt-UG29	DRT	DRT
UHGV-0113593_48	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0113593_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0113593_48	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0113593_48	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0113593_50	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0113593_52	Structural annotation	PF01649	NA	NA
UHGV-0113593_53	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0113593_54	PHROG	phrog_21303	NA	unknown function
UHGV-0113593_55	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0113593_56	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0113593_57	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0113593_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113593_58	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0113593_58	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0113593_61	UniRef90	UniRef90_R6M754	Leucine-rich repeat (LRR) protein	NA
UHGV-0113593_61	eggNOG-mapper	529884.Rhola_00002520	regulation of response to stimulus	NA
UHGV-0113593_61	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0113593_61	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0113593_61	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0113593_61	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0113593_62	PHROG	phrog_1220	head protein	head and packaging
UHGV-0113593_62	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0113593_62	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0113593_62	Structural annotation	PF20747	NA	NA
UHGV-0113593_63	PHROG	phrog_538	minor tail protein	tail
UHGV-0113593_63	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0113593_63	eggNOG-mapper	1497679.EP56_02980	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0113593_63	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0113593_63	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0113593_64	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0113593_64	UniRef90	UniRef90_A0A6L3VAU7	Phage tail family protein	NA
UHGV-0113593_64	eggNOG-mapper	1211814.CAPG01000074_gene3444	Phage tail protein	NA
UHGV-0113593_64	COG	COG4722	Phage-related protein YomH	NA
UHGV-0113593_64	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0113593_65	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0113593_65	UniRef90	UniRef90_A0A3D1WP41	Phage tail tape measure protein (Fragment)	NA
UHGV-0113593_65	eggNOG-mapper	411490.ANACAC_00728	Phage tail tape measure protein, TP901 family	NA
UHGV-0113593_65	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0113593_65	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0113593_65	COG	COG5283	Phage-related tail protein	NA
UHGV-0113593_65	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0113593_66	PHROG	phrog_6280	NA	unknown function
UHGV-0113593_66	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-0113593_66	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0113593_67	PHROG	phrog_6686	tail tube protein	tail
UHGV-0113593_67	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0113593_67	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0113593_67	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0113593_68	PHROG	phrog_7585	NA	unknown function
UHGV-0113593_68	eggNOG-mapper	1443122.Z958_05865	NA	NA
UHGV-0113593_68	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0113593_69	UniRef90	UniRef90_A0A0C1UI84	Bacteriophage HK97-gp10, tail-component family protein	NA
UHGV-0113593_69	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0113593_69	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113593_69	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0113593_70	PHROG	phrog_8435	NA	unknown function
UHGV-0113593_70	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0113593_71	PHROG	phrog_4020	NA	unknown function
UHGV-0113593_71	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0113593_72	Structural annotation	PF07498	NA	NA
UHGV-0113593_73	PHROG	phrog_29	major head protein	head and packaging
UHGV-0113593_73	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0113593_73	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0113593_73	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0113593_73	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0113593_74	PHROG	phrog_909	major head protein	head and packaging
UHGV-0113593_74	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0113593_74	Structural annotation	PF02924	NA	NA
UHGV-0113593_75	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0113593_75	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-0113593_75	Structural annotation	MF_02110	NA	NA
UHGV-0113593_76	PHROG	phrog_1315	NA	unknown function
UHGV-0113593_78	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0113593_78	UniRef90	UniRef90_A0A1R5GR66	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0113593_78	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0113593_80	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113593_80	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0113593_80	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113593_80	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113593_80	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA