UHGV-0113644

Genome information

Genome length 44,202 bps

CDS count 82

Completeness 99.90% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113644
vOTU ID	vOTU-060678
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_305494
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.66
Jumbo phage	No

Genome content
Genome length	44,202 bps
GC content	52.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	87.57%
Average CDS length	475.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113644_1	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0113644_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0113644_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0113644_2	PHROG	phrog_27545	NA	unknown function
UHGV-0113644_2	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0113644_2	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0113644_2	Structural annotation	PF16170	NA	NA
UHGV-0113644_3	PHROG	phrog_937	hemolysin	other
UHGV-0113644_3	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0113644_5	PHROG	phrog_13256	NA	unknown function
UHGV-0113644_5	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0113644_6	PHROG	phrog_21825	endolysin	lysis
UHGV-0113644_6	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0113644_6	eggNOG-mapper	693746.OBV_22650	CHAP domain	NA
UHGV-0113644_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0113644_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113644_6	Structural annotation	TIGR02594	NA	NA
UHGV-0113644_9	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0113644_9	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0113644_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113644_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113644_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0113644_12	PHROG	phrog_3754	NA	unknown function
UHGV-0113644_12	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0113644_13	PHROG	phrog_21718	NA	unknown function
UHGV-0113644_13	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0113644_14	PHROG	phrog_22984	NA	unknown function
UHGV-0113644_15	PHROG	phrog_16490	NA	unknown function
UHGV-0113644_15	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0113644_17	PHROG	phrog_20016	NA	unknown function
UHGV-0113644_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0113644_17	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0113644_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0113644_18	PHROG	phrog_28802	NA	unknown function
UHGV-0113644_18	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0113644_19	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0113644_20	KOfam	K14059	int; integrase	NA
UHGV-0113644_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0113644_20	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0113644_20	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0113644_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0113644_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0113644_20	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0113644_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113644_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113644_21	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0113644_22	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0113644_22	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113644_24	eggNOG-mapper	1384057.CD33_13945	Helix-turn-helix	NA
UHGV-0113644_24	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0113644_24	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0113644_27	PHROG	phrog_22529	NA	unknown function
UHGV-0113644_27	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0113644_27	eggNOG-mapper	1298920.KI911353_gene568	3D domain	NA
UHGV-0113644_27	Pfam	PF06725	3D domain	3D
UHGV-0113644_27	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0113644_27	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0113644_28	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0113644_29	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0113644_29	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0113644_29	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0113644_29	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0113644_29	Structural annotation	PF05565	NA	NA
UHGV-0113644_30	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113644_30	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0113644_30	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0113644_30	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0113644_31	PHROG	phrog_1389	NA	unknown function
UHGV-0113644_31	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0113644_31	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0113644_32	PHROG	phrog_7566	NA	unknown function
UHGV-0113644_32	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0113644_32	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0113644_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113644_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113644_33	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0113644_33	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0113644_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113644_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113644_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113644_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113644_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0113644_34	PHROG	phrog_16304	NA	unknown function
UHGV-0113644_34	UniRef90	UniRef90_UPI001D074B07	NA	NA
UHGV-0113644_34	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0113644_34	Pfam	PF19808	NA	DUF6291
UHGV-0113644_34	Structural annotation	PF19808	NA	NA
UHGV-0113644_35	PHROG	phrog_9804	NA	unknown function
UHGV-0113644_35	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0113644_35	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0113644_35	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0113644_35	Structural annotation	PF11417	NA	NA
UHGV-0113644_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113644_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113644_36	UniRef90	UniRef90_A0A7M2RKZ5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0113644_36	eggNOG-mapper	632245.CLP_1623	Endodeoxyribonuclease RusA	NA
UHGV-0113644_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113644_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113644_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0113644_39	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0113644_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0113644_40	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0113644_40	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0113644_40	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0113644_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113644_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113644_43	PHROG	phrog_38832	NA	unknown function
UHGV-0113644_43	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0113644_43	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0113644_44	PHROG	phrog_3136	NA	unknown function
UHGV-0113644_44	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0113644_44	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0113644_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0113644_44	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0113644_44	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0113644_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0113644_46	PHROG	phrog_22543	NA	unknown function
UHGV-0113644_46	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0113644_53	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113644_53	eggNOG-mapper	394503.Ccel_3073	NA	NA
UHGV-0113644_53	Structural annotation	PF20987	NA	NA
UHGV-0113644_54	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0113644_54	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0113644_54	UniRef90	UniRef90_A0A350TI33	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0113644_54	eggNOG-mapper	1274524.BSONL12_04833	Deoxyuridine 5'-triphosphate	NA
UHGV-0113644_54	Pfam	PF00692	dUTPase	dUTPase
UHGV-0113644_54	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0113644_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113644_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113644_56	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0113644_56	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0113644_56	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0113644_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113644_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0113644_57	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0113644_57	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0113644_57	Structural annotation	PF13542	NA	NA
UHGV-0113644_58	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113644_58	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0113644_58	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0113644_58	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0113644_58	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113644_58	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113644_58	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113644_58	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113644_59	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113644_59	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0113644_59	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0113644_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113644_59	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113644_61	PHROG	phrog_9479	NA	unknown function
UHGV-0113644_61	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0113644_61	Structural annotation	PF15529	NA	NA
UHGV-0113644_62	PHROG	phrog_8680	NA	unknown function
UHGV-0113644_62	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0113644_62	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0113644_62	Pfam	PF14386	NA	DUF4417
UHGV-0113644_62	Structural annotation	PF14386	NA	NA
UHGV-0113644_63	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113644_63	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0113644_63	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0113644_63	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113644_63	COG	COG2369	NA	NA
UHGV-0113644_63	Structural annotation	PF06152	NA	NA
UHGV-0113644_64	Structural annotation	PF18152	NA	NA
UHGV-0113644_65	PHROG	phrog_1233	NA	unknown function
UHGV-0113644_65	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0113644_65	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0113644_66	Structural annotation	PF06810	NA	NA
UHGV-0113644_67	PHROG	phrog_544	major head protein	head and packaging
UHGV-0113644_67	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0113644_67	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0113644_67	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0113644_68	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113644_68	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0113644_69	PHROG	phrog_3366	NA	unknown function
UHGV-0113644_69	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0113644_69	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0113644_70	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113644_70	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0113644_70	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0113644_70	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0113644_70	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0113644_71	PHROG	phrog_3266	tail completion	connector
UHGV-0113644_71	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0113644_71	Structural annotation	PF12691	NA	NA
UHGV-0113644_72	PHROG	phrog_3099	NA	unknown function
UHGV-0113644_72	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0113644_72	Structural annotation	TIGR02126	NA	NA
UHGV-0113644_73	PHROG	phrog_11299	NA	unknown function
UHGV-0113644_73	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0113644_73	Structural annotation	PF10666	NA	NA
UHGV-0113644_74	PHROG	phrog_706	NA	unknown function
UHGV-0113644_74	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0113644_74	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0113644_74	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0113644_74	Structural annotation	PF06854	NA	NA
UHGV-0113644_75	PHROG	phrog_806	NA	unknown function
UHGV-0113644_75	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0113644_75	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0113644_75	Pfam	PF11611	NA	DUF4352
UHGV-0113644_75	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0113644_76	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0113644_76	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0113644_76	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0113644_76	COG	COG1511	NA	NA
UHGV-0113644_76	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0113644_77	PHROG	phrog_1194	NA	unknown function
UHGV-0113644_77	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0113644_77	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0113644_78	PHROG	phrog_32308	NA	unknown function
UHGV-0113644_78	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0113644_78	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0113644_78	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0113644_79	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0113644_79	Structural annotation	PF14594	NA	NA
UHGV-0113644_80	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0113644_82	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0113644_82	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0113644_82	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA