UHGV-0113705

Genome information

Genome length 33,248 bps

CDS count 51

Completeness 97.33% (high-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113705
vOTU ID	vOTU-008254
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284271
BioSample	SAMEA4378242
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.51
Jumbo phage	No

Genome content
Genome length	33,248 bps
GC content	57.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.71%
Average CDS length	623.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113705_2	PHROG	phrog_263	holin	lysis
UHGV-0113705_2	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0113705_2	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0113705_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0113705_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0113705_2	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0113705_3	PHROG	phrog_1863	NA	unknown function
UHGV-0113705_3	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0113705_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0113705_4	PHROG	phrog_894	endolysin	lysis
UHGV-0113705_4	UniRef90	UniRef90_A0A3E2TR57	NA	NA
UHGV-0113705_4	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0113705_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0113705_4	COG	COG3108	NA	NA
UHGV-0113705_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0113705_5	PHROG	phrog_11541	NA	unknown function
UHGV-0113705_5	UniRef90	UniRef90_A0A173V0S4	SGNH_hydro domain-containing protein	NA
UHGV-0113705_5	eggNOG-mapper	877415.JNJQ01000011_gene667	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0113705_5	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0113705_5	Structural annotation	PF16255, MF_00526, NF007819, COG2755	NA	NA
UHGV-0113705_6	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0113705_6	PHROG	phrog_819	tail protein	tail
UHGV-0113705_6	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-0113705_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0113705_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0113705_6	COG	COG5492	NA	NA
UHGV-0113705_6	Structural annotation	PF02973	NA	NA
UHGV-0113705_7	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0113705_8	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-0113705_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0113705_8	Structural annotation	PF21602, PF00544, PF13385, NF007517, NF007636	NA	NA
UHGV-0113705_10	PHROG	phrog_3558	tail protein	tail
UHGV-0113705_10	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0113705_10	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-0113705_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0113705_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0113705_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0113705_11	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0113705_11	COG	COG1511	NA	NA
UHGV-0113705_12	PHROG	phrog_1633	NA	unknown function
UHGV-0113705_12	UniRef90	UniRef90_UPI001C392A95	NA	NA
UHGV-0113705_13	PHROG	phrog_1526	NA	unknown function
UHGV-0113705_13	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0113705_14	PHROG	phrog_117	major tail protein	tail
UHGV-0113705_14	UniRef90	UniRef90_A0A3E2U249	Phage tail protein	NA
UHGV-0113705_14	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0113705_14	COG	COG5492	NA	NA
UHGV-0113705_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0113705_15	PHROG	phrog_123	tail terminator	connector
UHGV-0113705_15	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0113705_15	Structural annotation	PF06141	NA	NA
UHGV-0113705_16	PHROG	phrog_387	neck protein	connector
UHGV-0113705_16	eggNOG-mapper	1321784.HMPREF1987_01077	NA	NA
UHGV-0113705_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0113705_17	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0113705_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0113705_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0113705_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0113705_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0113705_18	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0113705_18	Structural annotation	PF09355	NA	NA
UHGV-0113705_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0113705_19	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0113705_19	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0113705_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0113705_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0113705_20	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0113705_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0113705_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0113705_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0113705_23	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0113705_23	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0113705_23	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0113705_23	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0113705_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0113705_24	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0113705_24	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113705_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113705_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0113705_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0113705_25	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0113705_25	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0113705_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0113705_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0113705_26	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0113705_26	Structural annotation	PF19962	NA	NA
UHGV-0113705_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113705_27	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0113705_27	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0113705_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113705_28	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0113705_28	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0113705_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0113705_29	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0113705_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113705_29	UniRef90	UniRef90_UPI0009B07264	helix-turn-helix domain-containing protein	NA
UHGV-0113705_29	eggNOG-mapper	555079.Toce_0059	transcriptional regulator, XRE family	NA
UHGV-0113705_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0113705_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113705_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113705_29	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0113705_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0113705_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0113705_30	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0113705_30	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0113705_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0113705_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0113705_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0113705_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0113705_31	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0113705_31	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0113705_31	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0113705_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0113705_31	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0113705_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113705_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113705_32	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0113705_32	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0113705_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113705_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113705_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113705_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113705_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0113705_33	PHROG	phrog_7566	NA	unknown function
UHGV-0113705_33	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0113705_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0113705_36	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0113705_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0113705_37	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0113705_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0113705_38	Structural annotation	NF033787	NA	NA
UHGV-0113705_46	PHROG	phrog_37789	NA	unknown function
UHGV-0113705_47	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0113705_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113705_47	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113705_48	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0113705_49	Structural annotation	PF12957	NA	NA