UHGV-0113762

Genome information

Genome length 42,762 bps

CDS count 59

Completeness 97.28% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113762
vOTU ID	vOTU-066934
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287658
BioSample	SAMEA4378296
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.8
Jumbo phage	No

Genome content
Genome length	42,762 bps
GC content	48.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.00%
Average CDS length	654.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113762_1	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-0113762_1	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0113762_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113762_2	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0113762_2	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0113762_3	PHROG	phrog_19695	NA	unknown function
UHGV-0113762_3	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0113762_3	Structural annotation	PF10651	NA	NA
UHGV-0113762_4	PHROG	phrog_199	holin	lysis
UHGV-0113762_4	UniRef90	UniRef90_UPI001178BDD2	phage holin family protein	NA
UHGV-0113762_4	eggNOG-mapper	411902.CLOBOL_00117	Bacteriophage holin family	NA
UHGV-0113762_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0113762_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0113762_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0113762_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0113762_5	PHROG	phrog_1382	NA	unknown function
UHGV-0113762_5	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-0113762_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0113762_6	PHROG	phrog_1382	NA	unknown function
UHGV-0113762_6	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-0113762_6	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0113762_6	Structural annotation	NF040910	NA	NA
UHGV-0113762_8	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-0113762_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0113762_10	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-0113762_12	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0113762_13	PHROG	phrog_18725	NA	unknown function
UHGV-0113762_13	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0113762_14	PHROG	phrog_13879	NA	unknown function
UHGV-0113762_14	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0113762_14	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0113762_15	PHROG	phrog_1194	NA	unknown function
UHGV-0113762_15	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0113762_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0113762_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0113762_16	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0113762_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0113762_17	PHROG	phrog_706	NA	unknown function
UHGV-0113762_17	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-0113762_17	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0113762_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0113762_17	Structural annotation	PF06854	NA	NA
UHGV-0113762_18	PHROG	phrog_11299	NA	unknown function
UHGV-0113762_18	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-0113762_18	Structural annotation	PF10666	NA	NA
UHGV-0113762_19	PHROG	phrog_3099	NA	unknown function
UHGV-0113762_19	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0113762_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0113762_20	PHROG	phrog_3266	tail completion	connector
UHGV-0113762_20	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0113762_20	Structural annotation	PF20765	NA	NA
UHGV-0113762_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113762_21	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-0113762_21	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0113762_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0113762_21	Structural annotation	PF11114	NA	NA
UHGV-0113762_22	PHROG	phrog_3366	NA	unknown function
UHGV-0113762_22	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0113762_22	Pfam	PF20536	NA	DUF6751
UHGV-0113762_22	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0113762_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113762_23	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0113762_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0113762_24	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-0113762_24	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0113762_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0113762_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0113762_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0113762_24	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0113762_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0113762_25	UniRef90	UniRef90_UPI001923CA74	phage scaffolding protein	NA
UHGV-0113762_25	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0113762_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0113762_25	Structural annotation	PF06810	NA	NA
UHGV-0113762_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113762_27	UniRef90	UniRef90_UPI001D067B9F	phage minor capsid protein	NA
UHGV-0113762_27	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0113762_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113762_27	COG	COG2369	NA	NA
UHGV-0113762_27	Structural annotation	PF06152	NA	NA
UHGV-0113762_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113762_28	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-0113762_28	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0113762_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113762_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113762_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113762_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0113762_29	UniRef90	UniRef90_A0A413B195	PBSX family phage terminase large subunit	NA
UHGV-0113762_29	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0113762_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113762_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113762_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0113762_30	UniRef90	UniRef90_A0A0E2HIV1	Phage terminase small subunit	NA
UHGV-0113762_30	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-0113762_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0113762_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0113762_30	COG	COG5484	NA	NA
UHGV-0113762_30	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0113762_31	PHROG	phrog_38429	NA	unknown function
UHGV-0113762_32	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-0113762_33	PHROG	phrog_16442	NA	unknown function
UHGV-0113762_33	UniRef90	UniRef90_UPI001D0702FA	nucleotide-binding protein	NA
UHGV-0113762_33	eggNOG-mapper	873517.HMPREF1977_0217	Predicted nucleotide-binding protein containing TIR-like domain	NA
UHGV-0113762_33	PADLOC	Effector_00067	TIR	CBASS
UHGV-0113762_33	Pfam	PF10137	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
UHGV-0113762_33	COG	COG4271	Predicted nucleotide-binding protein containing TIR -like domain	NA
UHGV-0113762_34	PHROG	phrog_1558	NA	unknown function
UHGV-0113762_34	UniRef90	UniRef90_UPI001D093592	helix-turn-helix domain-containing protein	NA
UHGV-0113762_34	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-0113762_34	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0113762_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113762_36	PHROG	phrog_26861	NA	unknown function
UHGV-0113762_36	UniRef90	UniRef90_A0A174EBB7	SsDNA-binding protein	NA
UHGV-0113762_36	eggNOG-mapper	457421.CBFG_05302	Single-strand binding protein family	NA
UHGV-0113762_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113762_36	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0113762_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113762_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0113762_37	PHROG	phrog_15077	NA	unknown function
UHGV-0113762_37	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0113762_37	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0113762_37	Structural annotation	NF038070	NA	NA
UHGV-0113762_39	Structural annotation	MF_00773, NF041909, COG2075	NA	NA
UHGV-0113762_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0113762_41	UniRef90	UniRef90_UPI001D096690	NA	NA
UHGV-0113762_41	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-0113762_41	Pfam	PF06048	NA	DUF927
UHGV-0113762_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0113762_41	COG	COG5519	NA	NA
UHGV-0113762_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0113762_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0113762_42	PHROG	phrog_11992	NA	unknown function
UHGV-0113762_42	UniRef90	UniRef90_A0A8B2WXK7	DNA primase	NA
UHGV-0113762_42	eggNOG-mapper	1298920.KI911353_gene4867	CHC2 zinc finger	NA
UHGV-0113762_42	PADLOC	drt-UG29	DRT	DRT
UHGV-0113762_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0113762_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0113762_42	Structural annotation	PF01807	NA	NA
UHGV-0113762_43	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0113762_43	UniRef90	UniRef90_A0A0F0CIP3	ERCC4 domain-containing protein	NA
UHGV-0113762_43	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-0113762_43	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0113762_43	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0113762_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113762_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113762_44	UniRef90	UniRef90_UPI0011066615	single-stranded DNA-binding protein	NA
UHGV-0113762_44	eggNOG-mapper	1298920.KI911353_gene4869	Single-stranded DNA-binding protein	NA
UHGV-0113762_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113762_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113762_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113762_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113762_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0113762_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113762_45	UniRef90	UniRef90_UPI0011064CD2	ERF family protein	NA
UHGV-0113762_45	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0113762_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0113762_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0113762_46	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0113762_49	Pfam	PF19514	MobC-like protein	MobC_2
UHGV-0113762_52	eggNOG-mapper	1298920.KI911353_gene3265	NA	NA
UHGV-0113762_53	PHROG	phrog_9607	NA	unknown function
UHGV-0113762_53	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0113762_53	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0113762_55	UniRef90	UniRef90_A0A374P9Q2	XRE family transcriptional regulator	NA
UHGV-0113762_55	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0113762_55	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0113762_56	UniRef90	UniRef90_UPI001D07612F	helix-turn-helix transcriptional regulator	NA
UHGV-0113762_56	eggNOG-mapper	411902.CLOBOL_02555	COG COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0113762_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113762_56	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0113762_57	PHROG	phrog_87	metallo-protease	other
UHGV-0113762_57	UniRef90	UniRef90_A8RPT4	Peptidase_M78 domain-containing protein	NA
UHGV-0113762_57	eggNOG-mapper	411902.CLOBOL_02556	NA	NA
UHGV-0113762_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0113762_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0113762_57	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0113762_58	PHROG	phrog_4431	NA	unknown function
UHGV-0113762_58	UniRef90	UniRef90_A0A0U5PGI3	SHOCT domain-containing protein	NA
UHGV-0113762_58	eggNOG-mapper	1298920.KI911353_gene4876	NA	NA
UHGV-0113762_58	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0113762_58	Structural annotation	PF05120	NA	NA
UHGV-0113762_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0113762_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0113762_59	UniRef90	UniRef90_R5F6Q6	Resolvase domain protein	NA
UHGV-0113762_59	eggNOG-mapper	610130.Closa_2885	Resolvase, N terminal domain	NA
UHGV-0113762_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113762_59	Pfam	PF07508	Recombinase	Recombinase
UHGV-0113762_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0113762_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113762_59	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA