UHGV-0113782

Genome information

Genome length 33,845 bps

CDS count 48

Completeness 86.70% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113782
vOTU ID	vOTU-022197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295152
BioSample	SAMEA4431949
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.71
Jumbo phage	No

Genome content
Genome length	33,845 bps
GC content	40.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.69%
Average CDS length	658.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113782_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0113782_1	PHROG	phrog_6745	endolysin	lysis
UHGV-0113782_1	UniRef90	UniRef90_A0A173ZZ10	Lysozyme M1	NA
UHGV-0113782_1	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0113782_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0113782_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0113782_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0113782_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0113782_1	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0113782_2	PHROG	phrog_1129	holin	lysis
UHGV-0113782_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0113782_2	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0113782_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0113782_2	Structural annotation	PF16079	NA	NA
UHGV-0113782_3	PHROG	phrog_4105	NA	unknown function
UHGV-0113782_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0113782_5	PHROG	phrog_2310	NA	unknown function
UHGV-0113782_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0113782_7	PHROG	phrog_16164	NA	unknown function
UHGV-0113782_7	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0113782_7	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0113782_8	PHROG	phrog_6616	tail protein	tail
UHGV-0113782_8	UniRef90	UniRef90_UPI00156F9BB9	tail fiber domain-containing protein	NA
UHGV-0113782_8	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0113782_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0113782_8	COG	COG4926	Phage-related protein	NA
UHGV-0113782_8	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0113782_9	PHROG	phrog_1194	NA	unknown function
UHGV-0113782_9	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0113782_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0113782_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0113782_10	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0113782_10	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0113782_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0113782_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0113782_11	PHROG	phrog_8355	NA	unknown function
UHGV-0113782_11	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0113782_11	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0113782_12	PHROG	phrog_8300	NA	unknown function
UHGV-0113782_12	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0113782_12	Structural annotation	PF06854	NA	NA
UHGV-0113782_13	PHROG	phrog_820	major tail protein	tail
UHGV-0113782_13	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0113782_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0113782_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0113782_14	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0113782_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0113782_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0113782_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0113782_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0113782_15	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0113782_16	PHROG	phrog_8710	NA	unknown function
UHGV-0113782_16	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0113782_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0113782_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0113782_17	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0113782_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0113782_18	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0113782_18	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0113782_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0113782_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0113782_19	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0113782_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0113782_21	UniRef90	UniRef90_A0A414W2X3	Minor capsid protein	NA
UHGV-0113782_21	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0113782_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0113782_21	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0113782_21	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0113782_21	Structural annotation	PF06152	NA	NA
UHGV-0113782_22	PHROG	phrog_25639	NA	unknown function
UHGV-0113782_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0113782_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0113782_23	UniRef90	UniRef90_UPI0015D37DA7	capsid protein	NA
UHGV-0113782_23	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0113782_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0113782_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113782_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0113782_24	UniRef90	UniRef90_A0A417CQ07	Terminase	NA
UHGV-0113782_24	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0113782_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113782_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113782_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0113782_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0113782_25	UniRef90	UniRef90_A0A6L8XU44	Terminase small subunit	NA
UHGV-0113782_25	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0113782_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0113782_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0113782_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0113782_27	Structural annotation	PF07705, MF_00791, NF003967, COG2967	NA	NA
UHGV-0113782_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113782_28	UniRef90	UniRef90_A0A413B185	NA	NA
UHGV-0113782_28	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0113782_28	Pfam	PF07374	NA	DUF1492
UHGV-0113782_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0113782_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0113782_30	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0113782_30	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0113782_30	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-0113782_30	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0113782_30	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0113782_30	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0113782_30	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0113782_30	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0113782_32	UniRef90	UniRef90_UPI000E4C9378	helix-turn-helix transcriptional regulator	NA
UHGV-0113782_32	eggNOG-mapper	742733.HMPREF9469_02677	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0113782_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113782_32	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0113782_33	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0113782_33	eggNOG-mapper	1410653.JHVC01000010_gene3578	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0113782_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0113782_33	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0113782_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0113782_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113782_36	UniRef90	UniRef90_UPI000E4B7CD2	ATP-binding protein	NA
UHGV-0113782_36	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0113782_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0113782_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0113782_36	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0113782_37	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113782_37	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0113782_37	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0113782_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0113782_37	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0113782_38	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113782_38	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0113782_38	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0113782_39	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0113782_39	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0113782_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0113782_40	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0113782_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0113782_41	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113782_41	UniRef90	UniRef90_UPI000E49F6EC	NA	NA
UHGV-0113782_41	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0113782_41	Pfam	PF06378	NA	DUF1071
UHGV-0113782_41	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0113782_45	eggNOG-mapper	1121115.AXVN01000006_gene2172	NA	NA
UHGV-0113782_47	PHROG	phrog_31760	NA	unknown function
UHGV-0113782_48	PHROG	phrog_2232	NA	unknown function
UHGV-0113782_48	UniRef90	UniRef90_UPI00156E138F	NA	NA
UHGV-0113782_48	eggNOG-mapper	1408323.JQKK01000020_gene2985	NA	NA
UHGV-0113782_48	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0113782_48	Structural annotation	PF14337, TIGR03899	NA	NA