UHGV-0113806

Genome information

Genome length 33,698 bps

CDS count 62

Completeness 83.42% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113806
vOTU ID	vOTU-042436
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_306586
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.76
Jumbo phage	No

Genome content
Genome length	33,698 bps
GC content	54.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.16%
Average CDS length	499.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113806_1	KOfam	K07486	K07486; transposase	NA
UHGV-0113806_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-0113806_1	UniRef90	UniRef90_UPI001C11047A	transposase	NA
UHGV-0113806_1	eggNOG-mapper	1519439.JPJG01000031_gene1750	Transposase	NA
UHGV-0113806_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0113806_1	COG	COG3547	Transposase	NA
UHGV-0113806_2	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0113806_2	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0113806_2	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0113806_2	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0113806_2	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0113806_2	COG	COG2369	NA	NA
UHGV-0113806_2	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0113806_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113806_3	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0113806_3	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0113806_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113806_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0113806_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113806_4	PHROG	phrog_10250	NA	unknown function
UHGV-0113806_4	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0113806_4	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0113806_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113806_4	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0113806_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113806_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113806_4	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113806_5	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0113806_5	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0113806_5	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0113806_5	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0113806_5	Structural annotation	PF16677	NA	NA
UHGV-0113806_6	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0113806_6	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-0113806_6	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0113806_6	eggNOG-mapper	592010.GCWU000182_001827	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0113806_6	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0113806_6	Structural annotation	PF20473, NF041658	NA	NA
UHGV-0113806_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0113806_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113806_8	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0113806_8	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0113806_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113806_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113806_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113806_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113806_9	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0113806_9	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0113806_9	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0113806_9	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0113806_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113806_9	COG	COG0863	DNA modification methylase	NA
UHGV-0113806_9	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0113806_10	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0113806_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0113806_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113806_14	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0113806_14	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0113806_14	Pfam	PF06356	NA	DUF1064
UHGV-0113806_14	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0113806_15	PHROG	phrog_22543	NA	unknown function
UHGV-0113806_15	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0113806_16	PHROG	phrog_38832	NA	unknown function
UHGV-0113806_16	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0113806_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0113806_18	UniRef90	UniRef90_UPI001AA0C24D	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0113806_18	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0113806_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0113806_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0113806_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0113806_19	UniRef90	UniRef90_UPI001645C56E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0113806_19	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0113806_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0113806_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0113806_19	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0113806_20	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0113806_20	PHROG	phrog_17284	NA	unknown function
UHGV-0113806_20	UniRef90	UniRef90_A0A1Q6JM75	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0113806_20	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0113806_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0113806_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0113806_20	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0113806_21	PHROG	phrog_16304	NA	unknown function
UHGV-0113806_21	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0113806_21	Pfam	PF19808	NA	DUF6291
UHGV-0113806_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0113806_21	Structural annotation	PF19808	NA	NA
UHGV-0113806_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0113806_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0113806_23	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0113806_23	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0113806_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0113806_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0113806_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113806_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0113806_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0113806_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0113806_24	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113806_24	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0113806_24	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0113806_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0113806_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0113806_25	PHROG	phrog_1389	NA	unknown function
UHGV-0113806_25	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0113806_25	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0113806_26	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0113806_26	Structural annotation	TIGR01913	NA	NA
UHGV-0113806_27	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0113806_27	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0113806_27	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0113806_27	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0113806_27	Structural annotation	PF05565	NA	NA
UHGV-0113806_29	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0113806_30	PHROG	phrog_4433	NA	unknown function
UHGV-0113806_30	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0113806_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0113806_30	Structural annotation	NF007410	NA	NA
UHGV-0113806_31	PHROG	phrog_22529	NA	unknown function
UHGV-0113806_31	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0113806_31	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0113806_31	Pfam	PF06725	3D domain	3D
UHGV-0113806_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0113806_31	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0113806_33	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0113806_33	eggNOG-mapper	1282665.H353_08829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0113806_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113806_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0113806_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0113806_34	UniRef90	UniRef90_A0A1E4LQ57	HTH cro/C1-type domain-containing protein	NA
UHGV-0113806_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113806_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0113806_34	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0113806_39	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0113806_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0113806_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0113806_39	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0113806_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0113806_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0113806_40	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0113806_40	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0113806_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0113806_40	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0113806_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0113806_40	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0113806_41	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0113806_42	PHROG	phrog_28802	NA	unknown function
UHGV-0113806_43	PHROG	phrog_20016	NA	unknown function
UHGV-0113806_43	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0113806_43	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0113806_43	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0113806_44	PHROG	phrog_16490	NA	unknown function
UHGV-0113806_44	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0113806_45	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0113806_45	UniRef90	UniRef90_UPI001B2AECFD	HNH endonuclease	NA
UHGV-0113806_45	eggNOG-mapper	411901.BACCAC_01183	HNH endonuclease domain protein	NA
UHGV-0113806_45	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0113806_45	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0113806_45	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0113806_45	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0113806_46	PHROG	phrog_22984	NA	unknown function
UHGV-0113806_47	PHROG	phrog_21718	NA	unknown function
UHGV-0113806_47	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0113806_48	PHROG	phrog_3754	NA	unknown function
UHGV-0113806_48	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0113806_50	PHROG	phrog_21357	endolysin	lysis
UHGV-0113806_50	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0113806_50	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0113806_50	Pfam	PF05257	CHAP domain	CHAP
UHGV-0113806_50	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0113806_50	COG	COG1388	LysM repeat	NA
UHGV-0113806_50	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0113806_51	PHROG	phrog_13256	NA	unknown function
UHGV-0113806_51	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0113806_52	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0113806_52	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0113806_53	PHROG	phrog_4105	NA	unknown function
UHGV-0113806_55	PHROG	phrog_134	NA	unknown function
UHGV-0113806_55	UniRef90	UniRef90_A0A6G3M4W0	XkdX family protein	NA
UHGV-0113806_55	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0113806_55	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0113806_55	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0113806_56	eggNOG-mapper	1297617.JPJD01000014_gene875	NA	NA
UHGV-0113806_58	PHROG	phrog_18725	NA	unknown function
UHGV-0113806_58	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0113806_58	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0113806_59	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0113806_59	PHROG	phrog_11157	NA	unknown function
UHGV-0113806_59	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0113806_59	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0113806_59	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0113806_59	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0113806_59	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0113806_59	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0113806_61	PHROG	phrog_13879	NA	unknown function
UHGV-0113806_61	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0113806_61	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0113806_62	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA