UHGV-0113921

Genome information

Genome length 37,364 bps

CDS count 63

Completeness 82.09% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0113921
vOTU ID	vOTU-024814
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287516
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.64
Jumbo phage	No

Genome content
Genome length	37,364 bps
GC content	46.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.76%
Average CDS length	559.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0113921_1	PHROG	phrog_36464	NA	unknown function
UHGV-0113921_1	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0113921_1	eggNOG-mapper	861454.HMPREF9099_00341	NA	NA
UHGV-0113921_1	Structural annotation	PF09035	NA	NA
UHGV-0113921_2	UniRef90	UniRef90_UPI0015D1C8FF	lectin-1	NA
UHGV-0113921_2	Structural annotation	COG3296	NA	NA
UHGV-0113921_7	PHROG	phrog_674	NA	unknown function
UHGV-0113921_7	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0113921_7	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0113921_7	Pfam	PF07083	NA	DUF1351
UHGV-0113921_7	Structural annotation	PF07083	NA	NA
UHGV-0113921_8	PHROG	phrog_4400	NA	unknown function
UHGV-0113921_8	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0113921_8	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0113921_8	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0113921_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0113921_9	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0113921_9	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0113921_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0113921_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0113921_9	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0113921_10	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0113921_10	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0113921_11	PHROG	phrog_7566	NA	unknown function
UHGV-0113921_11	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0113921_11	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0113921_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0113921_13	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0113921_13	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0113921_13	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0113921_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0113921_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0113921_13	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0113921_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113921_14	UniRef90	UniRef90_A0A318EQP1	Putative phage protein (TIGR02220 family)	NA
UHGV-0113921_14	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0113921_14	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0113921_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0113921_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0113921_15	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0113921_15	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0113921_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0113921_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0113921_15	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0113921_19	PHROG	phrog_8684	NA	unknown function
UHGV-0113921_19	UniRef90	UniRef90_A0A3D2KEV6	YopX domain-containing protein	NA
UHGV-0113921_19	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0113921_19	Pfam	PF09643	YopX protein	YopX
UHGV-0113921_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0113921_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0113921_21	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0113921_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0113921_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0113921_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0113921_23	PHROG	phrog_20593	NA	unknown function
UHGV-0113921_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0113921_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0113921_26	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0113921_26	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0113921_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0113921_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0113921_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0113921_26	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0113921_27	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0113921_28	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-0113921_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0113921_30	UniRef90	UniRef90_UPI001C01EF14	RNA polymerase subunit sigma-70	NA
UHGV-0113921_30	eggNOG-mapper	1235792.C808_05326	NA	NA
UHGV-0113921_30	Structural annotation	PF02996	NA	NA
UHGV-0113921_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0113921_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0113921_31	UniRef90	UniRef90_UPI001C01B209	terminase small subunit	NA
UHGV-0113921_31	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0113921_31	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0113921_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0113921_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0113921_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0113921_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0113921_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0113921_32	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-0113921_32	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0113921_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0113921_32	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0113921_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0113921_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0113921_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0113921_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0113921_33	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-0113921_33	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0113921_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0113921_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0113921_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0113921_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0113921_34	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0113921_34	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0113921_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0113921_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0113921_34	COG	COG2369	NA	NA
UHGV-0113921_34	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0113921_35	PHROG	phrog_30750	NA	unknown function
UHGV-0113921_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0113921_37	UniRef90	UniRef90_UPI001C011948	phage scaffolding protein	NA
UHGV-0113921_37	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-0113921_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0113921_37	Structural annotation	PF06810	NA	NA
UHGV-0113921_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0113921_38	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0113921_38	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0113921_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0113921_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0113921_39	UniRef90	UniRef90_UPI001C012CC6	phage head-tail connector protein	NA
UHGV-0113921_39	eggNOG-mapper	1123511.KB905868_gene180	NA	NA
UHGV-0113921_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0113921_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0113921_40	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0113921_40	UniRef90	UniRef90_F2JK38	NA	NA
UHGV-0113921_40	eggNOG-mapper	642492.Clole_2754	NA	NA
UHGV-0113921_40	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0113921_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0113921_41	UniRef90	UniRef90_UPI001C020724	HK97 gp10 family phage protein	NA
UHGV-0113921_41	eggNOG-mapper	1123511.KB905868_gene178	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0113921_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0113921_41	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0113921_42	PHROG	phrog_525	NA	unknown function
UHGV-0113921_42	UniRef90	UniRef90_R6PDQ8	NA	NA
UHGV-0113921_42	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-0113921_42	Pfam	PF20765	NA	DUF6838
UHGV-0113921_42	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0113921_43	PHROG	phrog_966	NA	unknown function
UHGV-0113921_43	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-0113921_44	PHROG	phrog_279	tail sheath	tail
UHGV-0113921_44	UniRef90	UniRef90_UPI001C011AEF	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0113921_44	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0113921_44	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0113921_44	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0113921_44	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0113921_44	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0113921_45	PHROG	phrog_365	tail protein	tail
UHGV-0113921_45	UniRef90	UniRef90_UPI001C02900F	phage tail tube protein	NA
UHGV-0113921_45	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0113921_45	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0113921_45	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0113921_46	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0113921_46	UniRef90	UniRef90_A9KPN9	XkdN-like protein	NA
UHGV-0113921_46	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0113921_46	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0113921_46	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0113921_47	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0113921_47	UniRef90	UniRef90_UPI001C018F6C	tape measure protein	NA
UHGV-0113921_47	eggNOG-mapper	1203606.HMPREF1526_00335	tape measure	NA
UHGV-0113921_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0113921_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0113921_47	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0113921_47	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0113921_48	PHROG	phrog_17658	NA	unknown function
UHGV-0113921_48	Structural annotation	PF18116	NA	NA
UHGV-0113921_49	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0113921_49	PHROG	phrog_380	endolysin	lysis
UHGV-0113921_49	UniRef90	UniRef90_UPI001C0237CC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0113921_49	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0113921_49	Pfam	PF01476	LysM domain	LysM
UHGV-0113921_49	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0113921_49	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0113921_50	PHROG	phrog_400	tail protein	tail
UHGV-0113921_50	UniRef90	UniRef90_UPI001C018478	hydrolase	NA
UHGV-0113921_50	eggNOG-mapper	742740.HMPREF9474_02342	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0113921_50	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0113921_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0113921_51	PHROG	phrog_579	NA	unknown function
UHGV-0113921_51	UniRef90	UniRef90_UPI001C01DBFE	NA	NA
UHGV-0113921_51	eggNOG-mapper	1195236.CTER_3991	NA	NA
UHGV-0113921_51	Pfam	PF10844	NA	DUF2577
UHGV-0113921_51	Structural annotation	PF10844	NA	NA
UHGV-0113921_52	PHROG	phrog_120	baseplate protein	tail
UHGV-0113921_52	UniRef90	UniRef90_UPI001C00EA4C	NA	NA
UHGV-0113921_52	eggNOG-mapper	1235790.C805_00606	NA	NA
UHGV-0113921_52	Pfam	PF10934	NA	DUF2634
UHGV-0113921_52	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0113921_52	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0113921_53	PHROG	phrog_6	baseplate protein	tail
UHGV-0113921_53	UniRef90	UniRef90_UPI001C03463F	baseplate J/gp47 family protein	NA
UHGV-0113921_53	eggNOG-mapper	1449050.JNLE01000005_gene4831	Baseplate J-like protein	NA
UHGV-0113921_53	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0113921_53	COG	COG3299	NA	NA
UHGV-0113921_53	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0113921_54	PHROG	phrog_521	tail protein	tail
UHGV-0113921_54	UniRef90	UniRef90_UPI001C0121A6	NA	NA
UHGV-0113921_54	eggNOG-mapper	1235790.C805_00608	NA	NA
UHGV-0113921_54	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0113921_54	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0113921_54	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0113921_57	PHROG	phrog_134	NA	unknown function
UHGV-0113921_57	UniRef90	UniRef90_UPI001C00B7A3	XkdX family protein	NA
UHGV-0113921_57	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0113921_57	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0113921_57	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0113921_59	PHROG	phrog_1863	NA	unknown function
UHGV-0113921_59	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0113921_60	PHROG	phrog_443	holin	lysis
UHGV-0113921_60	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0113921_60	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0113921_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0113921_60	Structural annotation	PF16945	NA	NA
UHGV-0113921_61	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0113921_61	PHROG	phrog_2649	endolysin	lysis
UHGV-0113921_61	UniRef90	UniRef90_A0A3R6AVG7	M15 family peptidase	NA
UHGV-0113921_61	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0113921_61	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0113921_61	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0113921_61	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0113921_62	PHROG	phrog_3364	NA	unknown function
UHGV-0113921_62	UniRef90	UniRef90_UPI001EDFA2AF	ATP-binding protein	NA
UHGV-0113921_62	eggNOG-mapper	663278.Ethha_2305	Histidine kinase	NA
UHGV-0113921_62	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0113921_62	Structural annotation	PF02518, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA