UHGV-0114018

Genome information

Genome length 29,219 bps

CDS count 44

Completeness 74.48% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114018
vOTU ID	vOTU-032381
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295945
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.96
Jumbo phage	No

Genome content
Genome length	29,219 bps
GC content	36.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.43%
Average CDS length	616.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114018_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114018_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114018_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114018_2	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0114018_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0114018_3	PHROG	phrog_6802	NA	unknown function
UHGV-0114018_3	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0114018_4	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0114018_4	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0114018_4	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0114018_4	eggNOG-mapper	641107.CDLVIII_5566	Belongs to the dCTP deaminase family	NA
UHGV-0114018_4	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0114018_4	COG	COG0717	dCTP deaminase	NA
UHGV-0114018_4	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0114018_5	PHROG	phrog_5444	NA	unknown function
UHGV-0114018_5	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-0114018_6	PHROG	phrog_7488	NA	unknown function
UHGV-0114018_6	Structural annotation	PF08962	NA	NA
UHGV-0114018_10	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114018_10	UniRef90	UniRef90_A0A413DGU9	NA	NA
UHGV-0114018_10	eggNOG-mapper	908340.HMPREF9406_2594	NA	NA
UHGV-0114018_10	Pfam	PF12961	NA	DUF3850
UHGV-0114018_10	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0114018_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0114018_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0114018_12	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0114018_13	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0114018_13	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0114018_13	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0114018_13	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0114018_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114018_15	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0114018_15	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0114018_15	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0114018_16	UniRef90	UniRef90_UPI001A9BD19C	HNH endonuclease	NA
UHGV-0114018_16	eggNOG-mapper	536233.CLO_1419	HNH endonuclease	NA
UHGV-0114018_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114018_17	PHROG	phrog_20533	NA	unknown function
UHGV-0114018_17	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-0114018_17	eggNOG-mapper	1392490.JHZX01000001_gene2429	NA	NA
UHGV-0114018_17	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0114018_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0114018_18	UniRef90	UniRef90_UPI0019048959	phage terminase small subunit P27 family	NA
UHGV-0114018_18	eggNOG-mapper	536232.CLM_1655	Phage terminase, small subunit	NA
UHGV-0114018_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0114018_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0114018_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0114018_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0114018_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114018_19	UniRef90	UniRef90_UPI000773ED19	terminase large subunit	NA
UHGV-0114018_19	eggNOG-mapper	536232.CLM_1656	Terminase	NA
UHGV-0114018_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114018_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114018_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114018_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0114018_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114018_20	UniRef90	UniRef90_A0A3F2ZQR1	Phage portal protein, HK97 family	NA
UHGV-0114018_20	eggNOG-mapper	536232.CLM_1657	Phage portal protein, HK97 family	NA
UHGV-0114018_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114018_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114018_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114018_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114018_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0114018_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0114018_21	UniRef90	UniRef90_R6FVQ7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0114018_21	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0114018_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0114018_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0114018_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114018_22	UniRef90	UniRef90_UPI000C76C68B	phage major capsid protein	NA
UHGV-0114018_22	eggNOG-mapper	536232.CLM_1659	Phage major capsid protein, HK97 family	NA
UHGV-0114018_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114018_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114018_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114018_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114018_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0114018_23	UniRef90	UniRef90_UPI000773A5A6	head-tail connector protein	NA
UHGV-0114018_23	eggNOG-mapper	536232.CLM_1660	Phage gp6-like head-tail connector protein	NA
UHGV-0114018_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0114018_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0114018_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0114018_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0114018_24	UniRef90	UniRef90_E7GJW6	Phage head-tail adaptor	NA
UHGV-0114018_24	eggNOG-mapper	742740.HMPREF9474_01210	Phage head-tail joining protein	NA
UHGV-0114018_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0114018_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0114018_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0114018_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114018_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114018_25	UniRef90	UniRef90_R5S8G2	HK97 gp10 family phage protein	NA
UHGV-0114018_25	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0114018_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114018_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0114018_25	Structural annotation	TIGR01725	NA	NA
UHGV-0114018_26	PHROG	phrog_78	tail terminator	connector
UHGV-0114018_26	UniRef90	UniRef90_Q65KF9	Phage related protein	NA
UHGV-0114018_26	eggNOG-mapper	1195236.CTER_5107	NA	NA
UHGV-0114018_26	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0114018_27	PHROG	phrog_88	major tail protein	tail
UHGV-0114018_27	UniRef90	UniRef90_A0A174CNN5	Phage major tail protein, phi13 family	NA
UHGV-0114018_27	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0114018_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0114018_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0114018_28	PHROG	phrog_2115	tail protein	tail
UHGV-0114018_28	eggNOG-mapper	411470.RUMGNA_02074	NA	NA
UHGV-0114018_28	Structural annotation	PF11836	NA	NA
UHGV-0114018_29	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0114018_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0114018_29	UniRef90	UniRef90_UPI00129E2108	phage tail tape measure protein	NA
UHGV-0114018_29	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0114018_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114018_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114018_29	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0114018_29	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114018_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114018_30	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0114018_30	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0114018_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114018_30	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0114018_31	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0114018_31	UniRef90	UniRef90_UPI001C1127BE	phage tail protein	NA
UHGV-0114018_31	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0114018_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114018_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0114018_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0114018_31	COG	COG4926	Phage-related protein	NA
UHGV-0114018_31	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0114018_32	PHROG	phrog_24267	NA	unknown function
UHGV-0114018_32	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0114018_32	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0114018_32	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0114018_32	COG	COG4675	Phage tail collar domain	NA
UHGV-0114018_32	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0114018_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114018_35	PHROG	phrog_7698	endolysin	lysis
UHGV-0114018_35	UniRef90	UniRef90_A0A353JBB4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0114018_35	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114018_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0114018_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0114018_35	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0114018_37	PHROG	phrog_1129	holin	lysis
UHGV-0114018_37	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0114018_37	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0114018_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0114018_37	Structural annotation	PF16079	NA	NA
UHGV-0114018_38	PHROG	phrog_17771	NA	unknown function
UHGV-0114018_38	eggNOG-mapper	1122216.AUHW01000005_gene497	NA	NA
UHGV-0114018_39	PHROG	phrog_5059	NA	unknown function
UHGV-0114018_39	UniRef90	UniRef90_A0A3E2UC71	NA	NA
UHGV-0114018_39	eggNOG-mapper	1122216.AUHW01000005_gene498	NA	NA
UHGV-0114018_39	Pfam	PF08861	NA	DUF1828
UHGV-0114018_39	Pfam	PF08862	NA	DUF1829
UHGV-0114018_39	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0114018_40	PHROG	phrog_13890	NA	unknown function
UHGV-0114018_40	UniRef90	UniRef90_A0A6N9P941	Antitoxin	NA
UHGV-0114018_40	eggNOG-mapper	742738.HMPREF9460_00716	NA	NA
UHGV-0114018_40	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0114018_43	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0114018_43	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0114018_43	UniRef90	UniRef90_UPI000494E07D	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0114018_43	eggNOG-mapper	397290.C810_04355	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0114018_43	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0114018_43	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0114018_43	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0114018_44	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0114018_44	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0114018_44	UniRef90	UniRef90_R5F579	HicB family toxin-antitoxin system	NA
UHGV-0114018_44	eggNOG-mapper	397290.C810_04356	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0114018_44	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0114018_44	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0114018_44	Structural annotation	PF15919, COG1598	NA	NA