UHGV-0114089

Genome information

Genome length 27,691 bps

CDS count 42

Completeness 58.33% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114089
vOTU ID	vOTU-040712
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_277697
BioSample	SAMEA3879518
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.58
Jumbo phage	No

Genome content
Genome length	27,691 bps
GC content	51.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.90%
Average CDS length	590.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114089_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114089_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0114089_1	UniRef90	UniRef90_A0A1C6CZ75	Resolvase, N terminal domain	NA
UHGV-0114089_1	eggNOG-mapper	445972.ANACOL_00133	Resolvase, N terminal domain	NA
UHGV-0114089_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114089_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114089_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114089_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114089_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0114089_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0114089_4	UniRef90	UniRef90_A0A1C6CZG9	Bifunctional HTH-domain containing protein/aminotransferase	NA
UHGV-0114089_4	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0114089_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114089_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0114089_5	UniRef90	UniRef90_A0A847VYD9	NA	NA
UHGV-0114089_5	eggNOG-mapper	1159488.SEQMU2_01590	NA	NA
UHGV-0114089_5	Pfam	PF05339	NA	DUF739
UHGV-0114089_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0114089_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0114089_9	PHROG	phrog_3777	NA	unknown function
UHGV-0114089_9	UniRef90	UniRef90_A0A417F883	NA	NA
UHGV-0114089_9	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0114089_9	Pfam	PF12957	NA	DUF3846
UHGV-0114089_9	Structural annotation	PF12957	NA	NA
UHGV-0114089_10	PHROG	phrog_28990	NA	unknown function
UHGV-0114089_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114089_11	UniRef90	UniRef90_A0A3E3II12	ATP-binding protein	NA
UHGV-0114089_11	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0114089_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0114089_11	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0114089_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0114089_12	UniRef90	UniRef90_A0A7X5DCB3	PDDEXK_1 domain-containing protein	NA
UHGV-0114089_12	eggNOG-mapper	445972.ANACOL_00147	NA	NA
UHGV-0114089_12	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0114089_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0114089_13	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0114089_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0114089_14	PHROG	phrog_1934	NA	unknown function
UHGV-0114089_14	UniRef90	UniRef90_UPI0009349315	zinc-finger-containing protein	NA
UHGV-0114089_14	eggNOG-mapper	445972.ANACOL_00149	COG NOG19595 non supervised orthologous group	NA
UHGV-0114089_14	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0114089_14	Structural annotation	PF11672	NA	NA
UHGV-0114089_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114089_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114089_16	UniRef90	UniRef90_A0A417F7X5	Single-stranded DNA-binding protein	NA
UHGV-0114089_16	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0114089_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114089_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114089_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114089_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114089_16	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0114089_17	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0114089_17	UniRef90	UniRef90_A0A385YT03	Replication protein	NA
UHGV-0114089_17	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0114089_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114089_17	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-0114089_18	PHROG	phrog_9804	NA	unknown function
UHGV-0114089_18	UniRef90	UniRef90_A0A3D4MX47	Inhibitor_G39P domain-containing protein	NA
UHGV-0114089_18	eggNOG-mapper	1094508.Tsac_2439	Loader and inhibitor of phage G40P	NA
UHGV-0114089_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0114089_18	Structural annotation	PF11417	NA	NA
UHGV-0114089_19	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114089_19	PHROG	phrog_17417	NA	unknown function
UHGV-0114089_19	UniRef90	UniRef90_A0A3D4MXJ2	Hydrolase_2 domain-containing protein	NA
UHGV-0114089_19	eggNOG-mapper	445972.ANACOL_00154	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0114089_19	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0114089_19	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0114089_19	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0114089_20	Structural annotation	PF10762, NF007968	NA	NA
UHGV-0114089_21	KOfam	K03700	recU; recombination protein U	NA
UHGV-0114089_21	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114089_21	UniRef90	UniRef90_A0A3D4MX50	Holliday junction resolvase RecU	NA
UHGV-0114089_21	eggNOG-mapper	445972.ANACOL_00156	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0114089_21	Pfam	PF03838	Recombination protein U	RecU
UHGV-0114089_21	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0114089_21	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0114089_22	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0114089_22	PHROG	phrog_36563	NA	unknown function
UHGV-0114089_22	UniRef90	UniRef90_A0A3D4MX21	Ftsk_gamma domain-containing protein	NA
UHGV-0114089_22	eggNOG-mapper	445972.ANACOL_00157	ftsk spoiiie	NA
UHGV-0114089_22	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0114089_22	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0114089_22	Structural annotation	PF09397, MF_01586, NF006814, COG1846	NA	NA
UHGV-0114089_23	PHROG	phrog_6244	NA	unknown function
UHGV-0114089_23	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0114089_24	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0114089_24	UniRef90	UniRef90_A0A1C6L0N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0114089_24	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-0114089_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114089_24	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0114089_25	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0114089_25	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0114089_25	UniRef90	UniRef90_R6N9Q2	Resolvase	NA
UHGV-0114089_25	eggNOG-mapper	1378168.N510_00035	resolvase	NA
UHGV-0114089_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114089_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114089_25	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0114089_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0114089_27	UniRef90	UniRef90_A0A843GZU6	Phage terminase large subunit	NA
UHGV-0114089_27	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0114089_27	COG	COG5410	NA	NA
UHGV-0114089_28	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0114089_28	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0114089_28	Pfam	PF16478	NA	DUF5055
UHGV-0114089_28	Structural annotation	PF16478	NA	NA
UHGV-0114089_29	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0114089_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114089_30	UniRef90	UniRef90_C6CX09	Phage-related protein-like protein	NA
UHGV-0114089_30	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0114089_30	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0114089_30	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-0114089_31	PHROG	phrog_1194	NA	unknown function
UHGV-0114089_31	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-0114089_31	Pfam	PF20458	NA	DUF6711
UHGV-0114089_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0114089_32	PHROG	phrog_13879	NA	unknown function
UHGV-0114089_32	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0114089_32	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0114089_33	PHROG	phrog_18725	NA	unknown function
UHGV-0114089_33	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0114089_34	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0114089_35	PHROG	phrog_5302	tail protein	tail
UHGV-0114089_35	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0114089_35	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0114089_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0114089_35	Structural annotation	PF07210, PF13620, PF16893, NF040788, COG2512	NA	NA
UHGV-0114089_38	PHROG	phrog_4105	NA	unknown function
UHGV-0114089_38	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0114089_38	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0114089_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114089_40	PHROG	phrog_20388	endolysin	lysis
UHGV-0114089_40	UniRef90	UniRef90_A0A374UNP8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114089_40	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114089_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0114089_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114089_40	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0114089_41	PHROG	phrog_17876	NA	unknown function
UHGV-0114089_41	eggNOG-mapper	537007.BLAHAN_04259	NA	NA
UHGV-0114089_42	PHROG	phrog_6918	holin	lysis
UHGV-0114089_42	UniRef90	UniRef90_A0A6N8H4C3	Holin	NA
UHGV-0114089_42	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0114089_42	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0114089_42	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0114089_42	Structural annotation	PF09682, TIGR01673	NA	NA