UHGV-0114093

Genome information

Genome length 26,920 bps

CDS count 41

Completeness 75.44% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114093
vOTU ID	vOTU-032768
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292761
BioSample	SAMEA4431903
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.14
Jumbo phage	No

Genome content
Genome length	26,920 bps
GC content	42.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	86.45%
Average CDS length	571.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114093_6	PHROG	phrog_5063	NA	unknown function
UHGV-0114093_6	UniRef90	UniRef90_A0A8G1TN00	NA	NA
UHGV-0114093_6	eggNOG-mapper	102129.Lepto7375DRAFT_7256	NA	NA
UHGV-0114093_6	PADLOC	icity0062	Csx16	CRISPR-CAS
UHGV-0114093_6	Pfam	PF08960	STIV B116-like	STIV_B116-like
UHGV-0114093_6	Structural annotation	PF08960	NA	NA
UHGV-0114093_8	Structural annotation	PF00512	NA	NA
UHGV-0114093_9	UniRef90	UniRef90_A0A1E3U7J6	HTH cro/C1-type domain-containing protein	NA
UHGV-0114093_9	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114093_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114093_9	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0114093_11	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0114093_11	AcrCatalog	cluster_27905	NA	NA
UHGV-0114093_12	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0114093_12	UniRef90	UniRef90_R5F6L3	DNA-binding helix-turn-helix protein	NA
UHGV-0114093_12	eggNOG-mapper	203119.Cthe_3313	Helix-turn-helix	NA
UHGV-0114093_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114093_12	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0114093_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0114093_13	PHROG	phrog_291	endolysin	lysis
UHGV-0114093_13	UniRef90	UniRef90_UPI00148AEF69	peptidoglycan-binding protein	NA
UHGV-0114093_13	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0114093_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0114093_13	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114093_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0114093_13	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0114093_14	PHROG	phrog_1129	holin	lysis
UHGV-0114093_14	UniRef90	UniRef90_A0A1C7I437	Holin	NA
UHGV-0114093_14	eggNOG-mapper	33035.JPJF01000093_gene2233	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0114093_14	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0114093_14	Structural annotation	PF06946	NA	NA
UHGV-0114093_15	PHROG	phrog_1863	NA	unknown function
UHGV-0114093_15	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0114093_16	UniRef90	UniRef90_UPI001CDA071D	H-type lectin domain-containing protein	NA
UHGV-0114093_18	eggNOG-mapper	476272.RUMHYD_02869	NA	NA
UHGV-0114093_18	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0114093_19	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0114093_19	PHROG	phrog_11157	NA	unknown function
UHGV-0114093_19	UniRef90	UniRef90_A0A7G5N108	Big_13 domain-containing protein	NA
UHGV-0114093_19	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0114093_19	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0114093_19	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0114093_19	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0114093_19	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0114093_19	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0114093_20	PHROG	phrog_19280	NA	unknown function
UHGV-0114093_20	eggNOG-mapper	33035.JPJF01000023_gene3228	NA	NA
UHGV-0114093_20	Structural annotation	PF10651, TIGR02781	NA	NA
UHGV-0114093_21	KOfam	K21473	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	NA
UHGV-0114093_21	PHROG	phrog_11037	NA	unknown function
UHGV-0114093_21	UniRef90	UniRef90_A0A7G5N110	Peptidase M23	NA
UHGV-0114093_21	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0114093_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0114093_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0114093_21	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0114093_22	PHROG	phrog_13289	tail protein	tail
UHGV-0114093_22	UniRef90	UniRef90_A0A8G1TKQ2	Prophage_tail domain-containing protein	NA
UHGV-0114093_22	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0114093_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114093_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0114093_22	COG	COG4926	Phage-related protein	NA
UHGV-0114093_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0114093_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114093_23	UniRef90	UniRef90_UPI00164B9B8B	phage tail family protein	NA
UHGV-0114093_23	eggNOG-mapper	33035.JPJF01000023_gene3231	phage tail	NA
UHGV-0114093_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0114093_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114093_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0114093_24	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0114093_24	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0114093_24	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-0114093_24	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-0114093_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114093_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114093_24	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0114093_26	PHROG	phrog_88	major tail protein	tail
UHGV-0114093_26	UniRef90	UniRef90_A0A7G5N115	Phage tail protein	NA
UHGV-0114093_26	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0114093_26	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0114093_26	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0114093_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114093_27	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0114093_28	Structural annotation	PF05657	NA	NA
UHGV-0114093_29	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0114093_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114093_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114093_31	UniRef90	UniRef90_A0A7G5N120	Phage major capsid protein	NA
UHGV-0114093_31	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0114093_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114093_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114093_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114093_31	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0114093_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0114093_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0114093_32	UniRef90	UniRef90_A0A8G1WTD6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0114093_32	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0114093_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0114093_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0114093_32	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0114093_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114093_33	UniRef90	UniRef90_A0A7G5N122	Phage portal protein	NA
UHGV-0114093_33	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0114093_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114093_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114093_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114093_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114093_34	UniRef90	UniRef90_A0A7G5N123	Terminase large subunit	NA
UHGV-0114093_34	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0114093_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114093_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114093_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114093_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0114093_35	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0114093_35	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0114093_35	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0114093_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0114093_36	Structural annotation	PF18748, MF_03172, NF038208, COG4639	NA	NA
UHGV-0114093_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114093_37	UniRef90	UniRef90_UPI00164A3ACF	HNH endonuclease	NA
UHGV-0114093_37	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0114093_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114093_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114093_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114093_38	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0114093_38	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0114093_38	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0114093_39	PHROG	phrog_301	secreted protein	other
UHGV-0114093_39	UniRef90	UniRef90_UPI001F258ED3	NA	NA
UHGV-0114093_39	eggNOG-mapper	1280.SAXN108_0343	NA	NA