UHGV-0114230

Genome information

Genome length 26,458 bps

CDS count 41

Completeness 63.13% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114230
vOTU ID	vOTU-021773
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_288155
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.15
Jumbo phage	No

Genome content
Genome length	26,458 bps
GC content	43.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.61%
Average CDS length	589.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114230_1	KOfam	K08372	pepD; putative serine protease PepD [EC:3.4.21.-]	NA
UHGV-0114230_1	PHROG	phrog_11383	NA	unknown function
UHGV-0114230_1	UniRef90	UniRef90_A0A174C620	PDZ domain-containing protein	NA
UHGV-0114230_1	eggNOG-mapper	411460.RUMTOR_00842	COG COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	NA
UHGV-0114230_1	PADLOC	retron_XI	single gene	Retron
UHGV-0114230_1	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0114230_1	Pfam	PF13180	PDZ domain	PDZ_2
UHGV-0114230_1	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0114230_2	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0114230_2	PHROG	phrog_7573	NA	unknown function
UHGV-0114230_2	UniRef90	UniRef90_A0A415RWZ5	Manganese catalase family protein	NA
UHGV-0114230_2	eggNOG-mapper	665950.HMPREF1025_02567	Manganese containing catalase	NA
UHGV-0114230_2	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0114230_2	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0114230_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114230_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0114230_3	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0114230_3	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0114230_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114230_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114230_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114230_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114230_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0114230_4	UniRef90	UniRef90_A0A3E3JYW6	PBECR3 domain-containing protein	NA
UHGV-0114230_4	eggNOG-mapper	1408311.JNJM01000004_gene3324	NA	NA
UHGV-0114230_4	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0114230_4	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0114230_5	PHROG	phrog_1847	NA	unknown function
UHGV-0114230_5	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0114230_5	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0114230_5	Pfam	PF13250	NA	DUF4041
UHGV-0114230_5	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0114230_5	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0114230_5	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0114230_6	PHROG	phrog_87	metallo-protease	other
UHGV-0114230_6	UniRef90	UniRef90_A5KP71	Putative toxin-antitoxin system, toxin component	NA
UHGV-0114230_6	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0114230_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114230_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0114230_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0114230_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114230_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114230_7	UniRef90	UniRef90_A0A355NMI4	XRE family transcriptional regulator	NA
UHGV-0114230_7	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0114230_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0114230_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114230_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0114230_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114230_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114230_8	UniRef90	UniRef90_A0A355NM61	XRE family transcriptional regulator	NA
UHGV-0114230_8	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0114230_8	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114230_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0114230_8	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-0114230_12	PHROG	phrog_22934	NA	unknown function
UHGV-0114230_14	PHROG	phrog_5070	NA	unknown function
UHGV-0114230_14	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0114230_14	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0114230_14	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0114230_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0114230_15	PHROG	phrog_3777	NA	unknown function
UHGV-0114230_15	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0114230_15	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0114230_15	Pfam	PF12957	NA	DUF3846
UHGV-0114230_15	Structural annotation	PF12957	NA	NA
UHGV-0114230_16	PHROG	phrog_674	NA	unknown function
UHGV-0114230_16	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0114230_16	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0114230_16	Pfam	PF07083	NA	DUF1351
UHGV-0114230_16	Structural annotation	PF07083	NA	NA
UHGV-0114230_17	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0114230_18	PHROG	phrog_21649	NA	unknown function
UHGV-0114230_18	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0114230_18	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0114230_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0114230_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114230_18	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0114230_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114230_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114230_19	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0114230_19	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0114230_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114230_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114230_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114230_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114230_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114230_20	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0114230_20	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0114230_20	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0114230_20	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0114230_20	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0114230_21	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0114230_21	PHROG	phrog_11992	NA	unknown function
UHGV-0114230_21	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0114230_21	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0114230_21	PADLOC	drt-UG29	DRT	DRT
UHGV-0114230_21	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0114230_21	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0114230_21	Structural annotation	PF01807	NA	NA
UHGV-0114230_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0114230_22	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0114230_22	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0114230_22	Pfam	PF06048	NA	DUF927
UHGV-0114230_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0114230_22	COG	COG5519	NA	NA
UHGV-0114230_22	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0114230_24	PHROG	phrog_23374	NA	unknown function
UHGV-0114230_24	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0114230_25	PHROG	phrog_3253	NA	unknown function
UHGV-0114230_25	eggNOG-mapper	411460.RUMTOR_02072	NA	NA
UHGV-0114230_27	PHROG	phrog_25488	NA	unknown function
UHGV-0114230_27	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0114230_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0114230_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0114230_28	UniRef90	UniRef90_A0A828SYW6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0114230_28	eggNOG-mapper	411460.RUMTOR_02076	C-5 cytosine-specific DNA methylase	NA
UHGV-0114230_28	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0114230_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0114230_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0114230_28	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0114230_29	PHROG	phrog_25555	NA	unknown function
UHGV-0114230_30	PHROG	phrog_30671	NA	unknown function
UHGV-0114230_30	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0114230_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114230_32	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0114230_32	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0114230_32	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0114230_33	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0114230_33	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0114230_33	UniRef90	UniRef90_A0A828SZY9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0114230_33	eggNOG-mapper	1232452.BAIB02000007_gene1633	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0114230_33	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0114230_33	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0114230_33	COG	COG0338	DNA-adenine methylase	NA
UHGV-0114230_33	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0114230_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114230_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114230_34	UniRef90	UniRef90_A0A1Y4RLJ9	Terminase small subunit	NA
UHGV-0114230_34	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0114230_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114230_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114230_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0114230_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114230_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0114230_35	UniRef90	UniRef90_A0A828SUY2	Phage terminase large subunit	NA
UHGV-0114230_35	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-0114230_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114230_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114230_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0114230_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114230_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114230_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0114230_36	UniRef90	UniRef90_A0A828SVT3	Phage portal protein	NA
UHGV-0114230_36	eggNOG-mapper	1209989.TepiRe1_1145	phage portal protein, SPP1	NA
UHGV-0114230_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114230_36	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0114230_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0114230_37	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0114230_37	UniRef90	UniRef90_A0A828SR54	Phage_Mu_F domain-containing protein	NA
UHGV-0114230_37	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0114230_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0114230_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0114230_37	COG	COG2369	NA	NA
UHGV-0114230_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114230_40	UniRef90	UniRef90_UPI000C76E206	phage scaffolding protein	NA
UHGV-0114230_40	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0114230_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114230_40	Structural annotation	PF14265	NA	NA
UHGV-0114230_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-0114230_41	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-0114230_41	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0114230_41	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0114230_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA