UHGV-0114395

Genome information

Genome length 35,078 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114395
vOTU ID	vOTU-007774
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296031
BioSample	SAMEA4431959
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.5
Jumbo phage	No

Genome content
Genome length	35,078 bps
GC content	45.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.82%
Average CDS length	648.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114395_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0114395_1	PHROG	phrog_291	endolysin	lysis
UHGV-0114395_1	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-0114395_1	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-0114395_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0114395_1	Pfam	PF01476	LysM domain	LysM
UHGV-0114395_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0114395_1	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0114395_2	PHROG	phrog_1863	NA	unknown function
UHGV-0114395_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0114395_3	PHROG	phrog_13256	NA	unknown function
UHGV-0114395_3	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0114395_4	PHROG	phrog_134	NA	unknown function
UHGV-0114395_4	UniRef90	UniRef90_A0A374ERE4	XkdX family protein	NA
UHGV-0114395_4	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0114395_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0114395_4	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0114395_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0114395_6	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0114395_6	Structural annotation	PF10651	NA	NA
UHGV-0114395_8	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0114395_8	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0114395_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0114395_9	PHROG	phrog_1194	NA	unknown function
UHGV-0114395_9	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0114395_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0114395_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114395_10	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0114395_10	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0114395_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0114395_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0114395_11	PHROG	phrog_706	NA	unknown function
UHGV-0114395_11	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0114395_11	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0114395_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0114395_11	Structural annotation	PF06854	NA	NA
UHGV-0114395_12	PHROG	phrog_11299	NA	unknown function
UHGV-0114395_12	Structural annotation	PF20378	NA	NA
UHGV-0114395_13	PHROG	phrog_3099	NA	unknown function
UHGV-0114395_13	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0114395_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114395_14	PHROG	phrog_3266	tail completion	connector
UHGV-0114395_14	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0114395_14	Structural annotation	PF20765	NA	NA
UHGV-0114395_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114395_15	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-0114395_15	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0114395_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0114395_15	Structural annotation	PF11114	NA	NA
UHGV-0114395_16	PHROG	phrog_3366	NA	unknown function
UHGV-0114395_16	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0114395_16	Pfam	PF20536	NA	DUF6751
UHGV-0114395_16	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0114395_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0114395_17	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0114395_17	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0114395_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-0114395_18	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-0114395_18	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0114395_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0114395_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0114395_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114395_19	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-0114395_19	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0114395_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114395_19	Structural annotation	PF06810	NA	NA
UHGV-0114395_20	PHROG	phrog_872	NA	unknown function
UHGV-0114395_20	UniRef90	UniRef90_A0A373V416	NA	NA
UHGV-0114395_20	eggNOG-mapper	1226322.HMPREF1545_00781	NA	NA
UHGV-0114395_20	Pfam	PF11195	NA	DUF2829
UHGV-0114395_20	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0114395_20	Structural annotation	PF11195	NA	NA
UHGV-0114395_21	Structural annotation	PF12305	NA	NA
UHGV-0114395_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114395_22	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0114395_22	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0114395_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114395_22	COG	COG2369	NA	NA
UHGV-0114395_22	Structural annotation	PF06152	NA	NA
UHGV-0114395_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114395_23	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-0114395_23	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0114395_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114395_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114395_24	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0114395_24	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-0114395_24	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0114395_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114395_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114395_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0114395_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114395_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114395_25	KOfam	K09161	NA	NA
UHGV-0114395_25	PHROG	phrog_6084	NA	unknown function
UHGV-0114395_25	UniRef90	UniRef90_UPI00189BAEC5	YfbU family protein	NA
UHGV-0114395_25	eggNOG-mapper	536233.CLO_2529	Belongs to the UPF0304 family	NA
UHGV-0114395_25	Pfam	PF03887	YfbU domain	YfbU
UHGV-0114395_25	NCBIFam	NF003936.2	YfbU family protein	NA
UHGV-0114395_25	COG	COG3013	NA	NA
UHGV-0114395_25	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0114395_26	UniRef90	UniRef90_A0A373VND1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0114395_26	Structural annotation	PF07374	NA	NA
UHGV-0114395_27	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0114395_28	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114395_28	UniRef90	UniRef90_UPI00189DC125	NA	NA
UHGV-0114395_28	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-0114395_28	Pfam	PF12961	NA	DUF3850
UHGV-0114395_28	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0114395_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0114395_29	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0114395_29	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0114395_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0114395_29	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0114395_31	PHROG	phrog_824	NA	unknown function
UHGV-0114395_31	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-0114395_31	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0114395_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0114395_31	Structural annotation	PF08774	NA	NA
UHGV-0114395_32	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0114395_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0114395_32	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-0114395_32	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0114395_32	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0114395_32	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0114395_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0114395_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0114395_32	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0114395_34	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0114395_34	UniRef90	UniRef90_A0A1C6FHQ3	Superfamily II helicase and inactivated derivatives	NA
UHGV-0114395_34	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0114395_34	Pfam	PF06048	NA	DUF927
UHGV-0114395_34	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0114395_34	COG	COG5519	NA	NA
UHGV-0114395_34	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0114395_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114395_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114395_35	UniRef90	UniRef90_A0A1C6FIL5	Helix-destabilizing protein	NA
UHGV-0114395_35	eggNOG-mapper	1121370.AQUY01000001_gene1006	Single-strand binding protein family	NA
UHGV-0114395_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114395_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114395_35	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0114395_36	PHROG	phrog_3657	NA	unknown function
UHGV-0114395_36	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0114395_37	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0114395_37	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0114395_37	UniRef90	UniRef90_A0A1C6FHM2	Exodeoxyribonuclease 8	NA
UHGV-0114395_37	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0114395_37	Pfam	PF12684	NA	DUF3799
UHGV-0114395_37	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0114395_37	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0114395_41	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0114395_41	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0114395_41	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0114395_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0114395_41	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0114395_45	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-0114395_46	UniRef90	UniRef90_A0A373XXU1	XRE family transcriptional regulator	NA
UHGV-0114395_46	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0114395_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114395_47	UniRef90	UniRef90_A0A374HXY0	XRE family transcriptional regulator	NA
UHGV-0114395_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114395_47	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0114395_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114395_48	PHROG	phrog_87	metallo-protease	other
UHGV-0114395_48	UniRef90	UniRef90_A0A374HVM5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0114395_48	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0114395_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114395_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0114395_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0114395_49	PHROG	phrog_10292	NA	unknown function
UHGV-0114395_49	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-0114395_49	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0114395_49	Pfam	PF05154	TM2 domain	TM2
UHGV-0114395_49	COG	COG2314	NA	NA
UHGV-0114395_50	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0114395_50	PHROG	phrog_19856	NA	unknown function
UHGV-0114395_50	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-0114395_50	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-0114395_50	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0114395_50	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0114395_50	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0114395_51	KOfam	K14059	int; integrase	NA
UHGV-0114395_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0114395_51	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-0114395_51	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0114395_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114395_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114395_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA