UHGV-0114408

Genome information

Genome length 33,510 bps

CDS count 49

Completeness 98.31% (high-quality)

geNomad score 0.9627

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114408
vOTU ID	vOTU-008881
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_290873
BioSample	SAMEA4378272
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9627
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.51
Jumbo phage	No

Genome content
Genome length	33,510 bps
GC content	54.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.97%
Average CDS length	639.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114408_1	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0114408_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0114408_1	UniRef90	UniRef90_A0A2V2C971	RNA polymerase sigma factor	NA
UHGV-0114408_1	eggNOG-mapper	1226322.HMPREF1545_02933	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0114408_1	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0114408_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0114408_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0114408_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0114408_1	NCBIFam	NF006071.0	RNA polymerase sporulation sigma factor SigG	NA
UHGV-0114408_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114408_1	Structural annotation	PF04542, MF_00961, NF006158, COG1191	NA	NA
UHGV-0114408_2	UniRef90	UniRef90_A0A7C6DC09	SoxR reducing system RseC family protein	NA
UHGV-0114408_2	eggNOG-mapper	243233.MCA0997	chaperone-mediated protein folding	NA
UHGV-0114408_2	COG	COG5427	NA	NA
UHGV-0114408_3	KOfam	K14059	int; integrase	NA
UHGV-0114408_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0114408_3	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0114408_3	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0114408_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0114408_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114408_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114408_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0114408_4	PHROG	phrog_5783	NA	unknown function
UHGV-0114408_4	UniRef90	UniRef90_A0A564SC74	NYN domain protein	NA
UHGV-0114408_4	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-0114408_4	Pfam	PF01936	NYN domain	NYN
UHGV-0114408_4	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0114408_4	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0114408_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114408_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0114408_8	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0114408_8	eggNOG-mapper	67332.FM21_34415	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114408_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114408_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0114408_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114408_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114408_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114408_12	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0114408_12	eggNOG-mapper	67332.FM21_34415	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114408_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114408_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0114408_12	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0114408_16	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0114408_16	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0114408_16	eggNOG-mapper	537013.CLOSTMETH_01707	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114408_16	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0114408_16	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0114408_16	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0114408_17	UniRef90	UniRef90_UPI000542717F	helix-turn-helix domain-containing protein	NA
UHGV-0114408_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114408_17	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0114408_17	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0114408_17	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0114408_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114408_19	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0114408_19	eggNOG-mapper	931276.Cspa_c10030	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0114408_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0114408_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114408_19	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0114408_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0114408_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0114408_20	UniRef90	UniRef90_A0A3D4EGZ7	DNA helicase	NA
UHGV-0114408_20	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0114408_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0114408_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0114408_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114408_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0114408_21	PHROG	phrog_27610	NA	unknown function
UHGV-0114408_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0114408_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0114408_22	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0114408_22	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0114408_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0114408_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0114408_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0114408_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0114408_23	PHROG	phrog_27290	NA	unknown function
UHGV-0114408_23	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0114408_23	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0114408_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0114408_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0114408_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0114408_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114408_24	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0114408_24	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0114408_25	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0114408_25	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0114408_25	Structural annotation	PF14205	NA	NA
UHGV-0114408_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114408_26	UniRef90	UniRef90_A0A2G3Q3K7	Endonuclease	NA
UHGV-0114408_26	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0114408_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114408_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0114408_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0114408_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114408_28	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0114408_28	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0114408_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114408_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114408_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114408_28	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0114408_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114408_29	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0114408_29	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-0114408_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114408_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114408_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114408_29	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0114408_30	KOfam	K06904	NA	NA
UHGV-0114408_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0114408_30	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0114408_30	eggNOG-mapper	1121105.ATXL01000027_gene744	Caudovirus prohead serine protease	NA
UHGV-0114408_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114408_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0114408_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0114408_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0114408_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114408_31	UniRef90	UniRef90_A0A2N1PHH4	Phage major capsid protein	NA
UHGV-0114408_31	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0114408_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114408_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114408_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114408_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114408_32	PHROG	phrog_2550	NA	unknown function
UHGV-0114408_33	PHROG	phrog_19734	NA	unknown function
UHGV-0114408_33	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0114408_33	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0114408_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114408_34	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0114408_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114408_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0114408_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0114408_36	PHROG	phrog_88	major tail protein	tail
UHGV-0114408_36	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0114408_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0114408_37	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0114408_38	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0114408_38	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0114408_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0114408_39	PHROG	phrog_13564	minor tail protein	tail
UHGV-0114408_39	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0114408_40	PHROG	phrog_24267	NA	unknown function
UHGV-0114408_40	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0114408_40	COG	COG4675	Phage tail collar domain	NA
UHGV-0114408_40	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0114408_43	eggNOG-mapper	357276.EL88_03475	Leucine-rich repeat (LRR) protein	NA
UHGV-0114408_43	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0114408_46	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0114408_46	PHROG	phrog_18593	NA	unknown function
UHGV-0114408_46	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0114408_46	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0114408_46	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0114408_46	Structural annotation	PF14600	NA	NA
UHGV-0114408_47	PHROG	phrog_1493	endolysin	lysis
UHGV-0114408_47	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0114408_47	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-0114408_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114408_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114408_47	Structural annotation	PF01471, PF00877, NF033742, NF038080, COG0791	NA	NA
UHGV-0114408_48	PHROG	phrog_37604	NA	unknown function
UHGV-0114408_48	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0114408_49	Structural annotation	PF09682, TIGR01673	NA	NA