UHGV-0114435

Genome information

vOTU vOTU-019749

Genome length 28,645 bps

CDS count 47

Completeness 83.44% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114435
vOTU ID	vOTU-019749
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296869
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.82
Jumbo phage	No

Genome content
Genome length	28,645 bps
GC content	55.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.09%
Average CDS length	578.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114435_1	KOfam	K14059	int; integrase	NA
UHGV-0114435_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0114435_1	UniRef90	UniRef90_UPI001C3A4BBE	Site-specific integrase	NA
UHGV-0114435_1	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0114435_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114435_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114435_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0114435_2	UniRef90	UniRef90_UPI001C3AFD42	Ig-like domain-containing protein	NA
UHGV-0114435_2	eggNOG-mapper	649831.L083_0393	NA	NA
UHGV-0114435_2	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0114435_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0114435_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114435_3	UniRef90	UniRef90_A0A2A6Z724	Repressor LexA	NA
UHGV-0114435_3	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-0114435_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114435_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0114435_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0114435_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0114435_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0114435_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0114435_4	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-0114435_4	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114435_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0114435_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114435_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0114435_5	Structural annotation	PF04325	NA	NA
UHGV-0114435_7	PHROG	phrog_2232	NA	unknown function
UHGV-0114435_7	UniRef90	UniRef90_UPI0015C060FB	NA	NA
UHGV-0114435_7	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0114435_7	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0114435_8	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0114435_10	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0114435_10	Pfam	PF12957	NA	DUF3846
UHGV-0114435_10	Structural annotation	PF12957	NA	NA
UHGV-0114435_11	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0114435_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114435_13	PHROG	phrog_37789	NA	unknown function
UHGV-0114435_18	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0114435_18	PHROG	phrog_200	lipoprotein	other
UHGV-0114435_18	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0114435_18	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0114435_18	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0114435_18	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0114435_18	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0114435_19	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0114435_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0114435_20	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0114435_20	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0114435_21	PHROG	phrog_7566	NA	unknown function
UHGV-0114435_21	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0114435_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114435_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114435_22	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0114435_22	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0114435_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114435_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114435_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114435_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114435_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0114435_23	PHROG	phrog_15768	NA	unknown function
UHGV-0114435_23	UniRef90	UniRef90_A0A1C6HCL1	MarR family	NA
UHGV-0114435_23	eggNOG-mapper	929704.Myrod_0677	NA	NA
UHGV-0114435_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0114435_23	Structural annotation	PF05584, PF07261, MF_01819, TIGR01446, NF040939, COG3935	NA	NA
UHGV-0114435_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0114435_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0114435_24	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0114435_24	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0114435_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0114435_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114435_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0114435_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114435_28	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0114435_28	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0114435_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0114435_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114435_30	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-0114435_30	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0114435_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114435_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114435_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-0114435_31	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114435_31	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114435_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114435_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0114435_32	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0114435_32	UniRef90	UniRef90_A0A1C5Y960	CdiA_C domain-containing protein	NA
UHGV-0114435_32	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0114435_32	COG	COG2369	NA	NA
UHGV-0114435_32	Structural annotation	PF18451	NA	NA
UHGV-0114435_33	PHROG	phrog_17688	NA	unknown function
UHGV-0114435_33	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0114435_33	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0114435_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114435_33	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0114435_34	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0114435_34	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0114435_34	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0114435_34	Structural annotation	PF14265	NA	NA
UHGV-0114435_35	PHROG	phrog_32396	NA	unknown function
UHGV-0114435_35	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0114435_35	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0114435_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114435_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114435_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114435_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0114435_37	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0114435_37	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0114435_37	Pfam	PF09355	NA	Phage_Gp19
UHGV-0114435_37	Structural annotation	PF09355	NA	NA
UHGV-0114435_38	PHROG	phrog_501	head closure Hc1	connector
UHGV-0114435_38	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0114435_38	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0114435_38	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0114435_39	PHROG	phrog_387	neck protein	connector
UHGV-0114435_39	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0114435_40	PHROG	phrog_123	tail terminator	connector
UHGV-0114435_40	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0114435_40	Structural annotation	PF06141	NA	NA
UHGV-0114435_41	PHROG	phrog_117	major tail protein	tail
UHGV-0114435_41	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0114435_41	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0114435_41	COG	COG5492	NA	NA
UHGV-0114435_41	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0114435_42	PHROG	phrog_1526	NA	unknown function
UHGV-0114435_42	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0114435_43	Structural annotation	PF17318	NA	NA
UHGV-0114435_44	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0114435_44	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0114435_44	COG	COG1511	NA	NA
UHGV-0114435_45	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0114435_45	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0114435_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114435_45	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0114435_46	PHROG	phrog_3558	tail protein	tail
UHGV-0114435_46	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0114435_46	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-0114435_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114435_46	COG	COG4926	Phage-related protein	NA
UHGV-0114435_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0114435_47	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA