UHGV-0114450

Genome information

Genome length 37,666 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114450
vOTU ID	vOTU-045710
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308101
BioSample	SAMEA37078918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.23
Jumbo phage	No

Genome content
Genome length	37,666 bps
GC content	45.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.72%
Average CDS length	699.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114450_1	PHROG	phrog_14030	NA	unknown function
UHGV-0114450_1	UniRef90	UniRef90_A0A174JX56	Spore cortex-lytic enzyme	NA
UHGV-0114450_1	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0114450_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114450_1	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0114450_2	PHROG	phrog_1129	holin	lysis
UHGV-0114450_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0114450_2	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0114450_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0114450_2	Structural annotation	PF16079	NA	NA
UHGV-0114450_3	PHROG	phrog_4105	NA	unknown function
UHGV-0114450_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0114450_5	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0114450_5	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0114450_5	UniRef90	UniRef90_R5XQW1	Putative lipase/acylhydrolase domain-containing protein	NA
UHGV-0114450_5	eggNOG-mapper	1158601.I585_04395	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0114450_5	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0114450_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0114450_6	PHROG	phrog_3558	tail protein	tail
UHGV-0114450_6	UniRef90	UniRef90_A0A2A7AXJ1	Prophage_tail domain-containing protein	NA
UHGV-0114450_6	eggNOG-mapper	1235792.C808_05379	Prophage endopeptidase tail	NA
UHGV-0114450_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114450_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0114450_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0114450_6	COG	COG4926	Phage-related protein	NA
UHGV-0114450_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0114450_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114450_7	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0114450_7	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0114450_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114450_7	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0114450_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0114450_8	UniRef90	UniRef90_UPI001DCB5AF7	phage tail tape measure protein	NA
UHGV-0114450_8	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0114450_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114450_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114450_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0114450_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114450_10	PHROG	phrog_1021	NA	unknown function
UHGV-0114450_10	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0114450_11	PHROG	phrog_885	major tail protein	tail
UHGV-0114450_11	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0114450_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0114450_12	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0114450_12	Structural annotation	PF12691	NA	NA
UHGV-0114450_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114450_13	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-0114450_13	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0114450_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114450_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0114450_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0114450_14	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0114450_14	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0114450_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0114450_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114450_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-0114450_15	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0114450_15	Structural annotation	PF05135	NA	NA
UHGV-0114450_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0114450_17	UniRef90	UniRef90_UPI00156FB4D6	phage capsid protein	NA
UHGV-0114450_17	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0114450_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0114450_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114450_18	UniRef90	UniRef90_A0A1C5PQA6	Phage minor structural protein GP20	NA
UHGV-0114450_18	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0114450_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114450_18	Structural annotation	PF06810	NA	NA
UHGV-0114450_19	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0114450_19	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0114450_19	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0114450_19	Structural annotation	PF14359	NA	NA
UHGV-0114450_20	PHROG	phrog_918	NA	unknown function
UHGV-0114450_20	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0114450_20	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0114450_20	Pfam	PF19791	NA	DUF6275
UHGV-0114450_20	Structural annotation	PF19791	NA	NA
UHGV-0114450_21	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0114450_21	UniRef90	UniRef90_U2PKN7	Phage protein F-like protein	NA
UHGV-0114450_21	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0114450_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0114450_21	COG	COG2369	NA	NA
UHGV-0114450_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0114450_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0114450_22	UniRef90	UniRef90_U2Q3Z0	Putative phage portal protein, SPP1 Gp6	NA
UHGV-0114450_22	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114450_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114450_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0114450_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114450_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0114450_23	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-0114450_23	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0114450_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114450_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114450_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0114450_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114450_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114450_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114450_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114450_24	UniRef90	UniRef90_A0A174SAJ9	Terminase small subunit	NA
UHGV-0114450_24	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0114450_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114450_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114450_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0114450_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114450_25	UniRef90	UniRef90_A0A174SAH0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0114450_25	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0114450_25	Structural annotation	PF02996	NA	NA
UHGV-0114450_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0114450_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0114450_26	UniRef90	UniRef90_R9MLV4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0114450_26	eggNOG-mapper	1235799.C818_02656	C-5 cytosine-specific DNA methylase	NA
UHGV-0114450_26	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0114450_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0114450_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0114450_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0114450_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0114450_27	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0114450_27	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0114450_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0114450_27	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0114450_31	PHROG	phrog_9804	NA	unknown function
UHGV-0114450_31	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0114450_31	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0114450_31	AcrCatalog	cluster_137185	NA	NA
UHGV-0114450_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0114450_31	Structural annotation	PF11417	NA	NA
UHGV-0114450_32	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114450_32	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0114450_32	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0114450_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0114450_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0114450_32	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0114450_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114450_33	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-0114450_33	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0114450_33	Pfam	PF06356	NA	DUF1064
UHGV-0114450_33	Structural annotation	PF06356	NA	NA
UHGV-0114450_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114450_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114450_34	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-0114450_34	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0114450_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114450_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114450_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114450_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114450_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114450_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114450_35	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-0114450_35	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0114450_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0114450_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114450_35	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0114450_36	PHROG	phrog_674	NA	unknown function
UHGV-0114450_36	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-0114450_36	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0114450_36	Pfam	PF07083	NA	DUF1351
UHGV-0114450_36	Structural annotation	PF07083	NA	NA
UHGV-0114450_40	PHROG	phrog_6058	NA	unknown function
UHGV-0114450_40	UniRef90	UniRef90_A0A174B0Z1	Helix-turn-helix domain	NA
UHGV-0114450_40	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0114450_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114450_40	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0114450_41	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-0114450_41	Structural annotation	NF040556	NA	NA
UHGV-0114450_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0114450_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0114450_43	UniRef90	UniRef90_A0A417WXZ3	Oxidoreductase	NA
UHGV-0114450_43	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0114450_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0114450_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0114450_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0114450_43	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0114450_44	eggNOG-mapper	397290.C810_05154	NA	NA
UHGV-0114450_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0114450_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114450_45	UniRef90	UniRef90_A0A174S783	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0114450_45	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0114450_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114450_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114450_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114450_47	PHROG	phrog_7974	NA	unknown function
UHGV-0114450_47	eggNOG-mapper	931276.Cspa_c57370	Phage Mu protein F like protein	NA
UHGV-0114450_47	Pfam	PF14020	NA	DUF4236
UHGV-0114450_47	COG	COG2369	NA	NA
UHGV-0114450_47	Structural annotation	PF14020	NA	NA
UHGV-0114450_48	KOfam	K14059	int; integrase	NA
UHGV-0114450_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0114450_48	UniRef90	UniRef90_A0A174AZK7	Site-specific tyrosine recombinase XerC	NA
UHGV-0114450_48	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0114450_48	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0114450_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0114450_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114450_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114450_48	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA