UHGV-0114477

Genome information

Genome length 34,865 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114477
vOTU ID	vOTU-061213
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297601
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.68
Jumbo phage	No

Genome content
Genome length	34,865 bps
GC content	40.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.14%
Average CDS length	547.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114477_1	PHROG	phrog_538	minor tail protein	tail
UHGV-0114477_1	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0114477_1	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0114477_1	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0114477_1	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0114477_2	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0114477_2	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0114477_2	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0114477_3	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0114477_3	UniRef90	UniRef90_A0A415MTD4	Phage tail tape measure protein	NA
UHGV-0114477_3	eggNOG-mapper	171693.BN988_01595	Phage-related minor tail protein	NA
UHGV-0114477_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114477_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114477_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0114477_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114477_5	UniRef90	UniRef90_UPI00040253E3	SAP domain-containing protein	NA
UHGV-0114477_5	Pfam	PF02037	SAP domain	SAP
UHGV-0114477_6	UniRef90	UniRef90_UPI00156FB996	phage tail protein	NA
UHGV-0114477_6	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0114477_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0114477_7	PHROG	phrog_5509	neck protein	connector
UHGV-0114477_7	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0114477_7	eggNOG-mapper	1139219.I569_00237	NA	NA
UHGV-0114477_7	Structural annotation	TIGR01725	NA	NA
UHGV-0114477_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0114477_9	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0114477_9	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0114477_9	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0114477_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114477_10	PHROG	phrog_749	NA	unknown function
UHGV-0114477_10	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0114477_10	eggNOG-mapper	1123315.AUIP01000014_gene1953	NA	NA
UHGV-0114477_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114477_11	UniRef90	UniRef90_UPI00156ED36D	phage major capsid protein	NA
UHGV-0114477_11	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0114477_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114477_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114477_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114477_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114477_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0114477_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0114477_12	UniRef90	UniRef90_A0A2V1JME2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0114477_12	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0114477_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0114477_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0114477_12	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0114477_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114477_13	UniRef90	UniRef90_A0A415MTC5	Phage portal protein	NA
UHGV-0114477_13	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0114477_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114477_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114477_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114477_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114477_14	UniRef90	UniRef90_A0A415MTC4	Terminase large subunit	NA
UHGV-0114477_14	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0114477_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114477_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114477_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114477_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0114477_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0114477_15	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0114477_15	eggNOG-mapper	610130.Closa_0740	NA	NA
UHGV-0114477_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0114477_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0114477_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0114477_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114477_17	UniRef90	UniRef90_UPI001570283D	HNH endonuclease	NA
UHGV-0114477_17	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0114477_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114477_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114477_19	UniRef90	UniRef90_A0A3A6HQ49	Chemotaxis protein	NA
UHGV-0114477_19	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0114477_19	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0114477_21	PHROG	phrog_11237	NA	unknown function
UHGV-0114477_21	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0114477_22	PHROG	phrog_6568	NA	unknown function
UHGV-0114477_25	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-0114477_29	PHROG	phrog_10714	NA	unknown function
UHGV-0114477_29	Structural annotation	PF10400, TIGR02501	NA	NA
UHGV-0114477_30	UniRef90	UniRef90_R7EB13	Putative long-chain-fatty-acid-CoA ligase	NA
UHGV-0114477_30	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0114477_31	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0114477_31	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0114477_31	UniRef90	UniRef90_UPI0019570FFD	N-6 DNA methylase	NA
UHGV-0114477_31	eggNOG-mapper	1401065.HMPREF2130_08355	PFAM N-6 DNA methylase	NA
UHGV-0114477_31	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0114477_31	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0114477_31	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0114477_31	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0114477_32	PHROG	phrog_28508	NA	unknown function
UHGV-0114477_32	Structural annotation	PF19005	NA	NA
UHGV-0114477_36	PHROG	phrog_15077	NA	unknown function
UHGV-0114477_36	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0114477_36	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0114477_37	PHROG	phrog_8470	NA	unknown function
UHGV-0114477_37	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0114477_37	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0114477_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0114477_37	Structural annotation	PF14284	NA	NA
UHGV-0114477_38	PHROG	phrog_4433	NA	unknown function
UHGV-0114477_38	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0114477_38	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0114477_38	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0114477_39	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0114477_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0114477_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0114477_40	UniRef90	UniRef90_UPI0019614967	tyrosine-type recombinase/integrase	NA
UHGV-0114477_40	eggNOG-mapper	411461.DORFOR_01160	Belongs to the 'phage' integrase family	NA
UHGV-0114477_40	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0114477_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114477_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114477_40	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0114477_42	PHROG	phrog_7566	NA	unknown function
UHGV-0114477_42	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0114477_43	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0114477_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0114477_43	UniRef90	UniRef90_A0A8E3MXL0	RNase H type-1 domain-containing protein	NA
UHGV-0114477_43	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0114477_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0114477_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0114477_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0114477_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114477_44	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0114477_44	Structural annotation	PF01446	NA	NA
UHGV-0114477_52	Structural annotation	PF21138, NF009630	NA	NA
UHGV-0114477_53	PHROG	phrog_27728	NA	unknown function
UHGV-0114477_53	eggNOG-mapper	391624.OIHEL45_06935	NA	NA
UHGV-0114477_53	Structural annotation	PF16538	NA	NA
UHGV-0114477_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114477_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114477_55	UniRef90	UniRef90_UPI00143AA683	helix-turn-helix domain-containing protein	NA
UHGV-0114477_55	eggNOG-mapper	1151292.QEW_0314	DNA-binding helix-turn-helix protein	NA
UHGV-0114477_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0114477_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114477_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114477_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114477_57	PHROG	phrog_5783	NA	unknown function
UHGV-0114477_57	UniRef90	UniRef90_R6EW51	NYN domain-containing protein	NA
UHGV-0114477_57	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0114477_57	Pfam	PF01936	NYN domain	NYN
UHGV-0114477_57	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0114477_57	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0114477_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114477_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0114477_58	UniRef90	UniRef90_A0A391NZ14	Serine recombinase	NA
UHGV-0114477_58	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0114477_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114477_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114477_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114477_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA