UHGV-0114492

Genome information

Genome length 55,778 bps

CDS count 80

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114492
vOTU ID	vOTU-008124
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285471
BioSample	SAMEA4378327
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.87
Jumbo phage	No

Genome content
Genome length	55,778 bps
GC content	55.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	94.99%
Average CDS length	664.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114492_1	PHROG	phrog_13712	holin	lysis
UHGV-0114492_1	UniRef90	UniRef90_A0A2P8EL22	Superfamily 6 holin (LLH)	NA
UHGV-0114492_1	eggNOG-mapper	1203606.HMPREF1526_00252	NA	NA
UHGV-0114492_1	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0114492_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0114492_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0114492_3	UniRef90	UniRef90_UPI001A9BC0D1	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0114492_3	eggNOG-mapper	643562.Daes_1630	Peptidase M15	NA
UHGV-0114492_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0114492_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114492_3	COG	COG3108	NA	NA
UHGV-0114492_3	Structural annotation	PF05951, PF01471, COG3108	NA	NA
UHGV-0114492_4	PHROG	phrog_937	hemolysin	other
UHGV-0114492_4	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0114492_5	PHROG	phrog_1382	NA	unknown function
UHGV-0114492_5	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0114492_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0114492_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0114492_7	UniRef90	UniRef90_A0A1G5AFK2	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0114492_7	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0114492_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0114492_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0114492_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0114492_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0114492_9	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0114492_10	KOfam	K21449	ata, sadA, emaA; trimeric autotransporter adhesin	NA
UHGV-0114492_10	PHROG	phrog_14959	NA	unknown function
UHGV-0114492_10	UniRef90	UniRef90_R5G2B7	NA	NA
UHGV-0114492_10	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0114492_10	Pfam	PF19789	NA	DUF6273
UHGV-0114492_11	PHROG	phrog_6616	tail protein	tail
UHGV-0114492_11	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0114492_11	Structural annotation	PF16466, NF033848, COG4379	NA	NA
UHGV-0114492_12	PHROG	phrog_1194	NA	unknown function
UHGV-0114492_12	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0114492_12	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0114492_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114492_13	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0114492_13	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0114492_13	COG	COG5412	Phage-related protein	NA
UHGV-0114492_14	PHROG	phrog_706	NA	unknown function
UHGV-0114492_14	UniRef90	UniRef90_A0A1H7MNA7	Bacteriophage Gp15 protein	NA
UHGV-0114492_14	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0114492_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0114492_14	Structural annotation	PF06854	NA	NA
UHGV-0114492_15	PHROG	phrog_11299	NA	unknown function
UHGV-0114492_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0114492_16	PHROG	phrog_3099	NA	unknown function
UHGV-0114492_16	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0114492_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114492_17	PHROG	phrog_3266	tail completion	connector
UHGV-0114492_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0114492_17	Structural annotation	PF12691	NA	NA
UHGV-0114492_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114492_18	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0114492_18	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0114492_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0114492_18	Structural annotation	PF11114	NA	NA
UHGV-0114492_19	PHROG	phrog_3366	NA	unknown function
UHGV-0114492_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0114492_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0114492_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0114492_22	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0114492_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0114492_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114492_23	UniRef90	UniRef90_A0A1H7MPG5	Phage minor structural protein GP20	NA
UHGV-0114492_23	eggNOG-mapper	768486.EHR_02625	Phage minor structural protein GP20	NA
UHGV-0114492_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114492_23	Structural annotation	PF06810	NA	NA
UHGV-0114492_24	Structural annotation	TIGR04438	NA	NA
UHGV-0114492_26	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0114492_26	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-0114492_26	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-0114492_26	Pfam	PF14359	NA	DUF4406
UHGV-0114492_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114492_28	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0114492_28	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0114492_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114492_28	COG	COG2369	NA	NA
UHGV-0114492_28	Structural annotation	PF06152	NA	NA
UHGV-0114492_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114492_29	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0114492_29	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0114492_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114492_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114492_30	PHROG	phrog_10250	NA	unknown function
UHGV-0114492_30	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0114492_30	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0114492_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114492_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114492_30	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0114492_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0114492_31	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0114492_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0114492_32	PHROG	phrog_27044	NA	unknown function
UHGV-0114492_32	UniRef90	UniRef90_A0A3F3JUD8	Citrulline cluster-linked protein	NA
UHGV-0114492_32	eggNOG-mapper	546269.HMPREF0389_01148	QueT transporter	NA
UHGV-0114492_32	Pfam	PF06177	QueT transporter	QueT
UHGV-0114492_32	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0114492_32	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0114492_33	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0114492_33	UniRef90	UniRef90_A0A6N7S662	ParB domain-containing protein	NA
UHGV-0114492_33	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0114492_33	Structural annotation	PF00331, MF_00168, NF040790, COG0069	NA	NA
UHGV-0114492_34	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0114492_34	UniRef90	UniRef90_A0A3F3JUE2	ParB domain-containing protein	NA
UHGV-0114492_34	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0114492_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0114492_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0114492_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0114492_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114492_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0114492_35	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0114492_37	Structural annotation	PF14354	NA	NA
UHGV-0114492_38	KOfam	K03700	recU; recombination protein U	NA
UHGV-0114492_38	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114492_38	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0114492_38	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0114492_38	Pfam	PF03838	Recombination protein U	RecU
UHGV-0114492_38	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0114492_38	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0114492_40	PHROG	phrog_3253	NA	unknown function
UHGV-0114492_40	UniRef90	UniRef90_UPI001C032A7B	resolvase	NA
UHGV-0114492_40	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0114492_40	Structural annotation	PF18618	NA	NA
UHGV-0114492_42	PHROG	phrog_6568	NA	unknown function
UHGV-0114492_42	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0114492_43	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0114492_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0114492_43	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0114492_43	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0114492_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0114492_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0114492_43	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0114492_45	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0114492_48	Structural annotation	MF_00273, COG2157	NA	NA
UHGV-0114492_51	Structural annotation	PF11417	NA	NA
UHGV-0114492_52	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0114492_52	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0114492_52	UniRef90	UniRef90_UPI001CBE9731	DnaD domain protein	NA
UHGV-0114492_52	eggNOG-mapper	634956.Geoth_0760	dnaD_dom DnaD domain protein	NA
UHGV-0114492_52	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0114492_52	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0114492_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114492_52	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0114492_53	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0114492_54	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114492_54	UniRef90	UniRef90_A0A3E2UDI4	Phage recombination protein Bet	NA
UHGV-0114492_54	eggNOG-mapper	469378.Ccur_02960	RecT family	NA
UHGV-0114492_54	Pfam	PF03837	RecT family	RecT
UHGV-0114492_54	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0114492_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0114492_54	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0114492_55	PHROG	phrog_674	NA	unknown function
UHGV-0114492_55	UniRef90	UniRef90_A0A3E2UDL3	NA	NA
UHGV-0114492_55	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-0114492_55	Pfam	PF07083	NA	DUF1351
UHGV-0114492_55	Structural annotation	PF07083	NA	NA
UHGV-0114492_56	PHROG	phrog_38771	NA	unknown function
UHGV-0114492_58	UniRef90	UniRef90_E2ZNT7	HTH_17 domain-containing protein	NA
UHGV-0114492_58	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114492_58	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0114492_62	PHROG	phrog_31107	NA	unknown function
UHGV-0114492_64	PHROG	phrog_3136	NA	unknown function
UHGV-0114492_64	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0114492_64	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0114492_64	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0114492_67	PHROG	phrog_24588	NA	unknown function
UHGV-0114492_67	eggNOG-mapper	537007.BLAHAN_05426	NA	NA
UHGV-0114492_67	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0114492_68	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0114492_68	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0114492_68	UniRef90	UniRef90_UPI001C00D5D2	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0114492_68	eggNOG-mapper	537007.BLAHAN_04213	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0114492_68	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0114492_68	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0114492_68	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0114492_69	PHROG	phrog_7711	NA	unknown function
UHGV-0114492_69	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0114492_70	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-0114492_71	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0114492_71	UniRef90	UniRef90_A0A3D2QEK1	Conjugal transfer protein TraC	NA
UHGV-0114492_71	eggNOG-mapper	935557.ATYB01000007_gene1212	nucleotidyltransferase activity	NA
UHGV-0114492_71	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0114492_72	UniRef90	UniRef90_A0A3E2V0U9	NA	NA
UHGV-0114492_72	Pfam	PF05339	NA	DUF739
UHGV-0114492_72	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0114492_74	PHROG	phrog_1221	NA	unknown function
UHGV-0114492_74	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-0114492_74	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-0114492_74	Pfam	PF06067	NA	DUF932
UHGV-0114492_74	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0114492_74	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0114492_76	PHROG	phrog_38037	NA	unknown function
UHGV-0114492_77	UniRef90	UniRef90_A0A3E2UZE6	XRE family transcriptional regulator	NA
UHGV-0114492_77	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114492_77	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114492_77	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0114492_78	PHROG	phrog_87	metallo-protease	other
UHGV-0114492_78	UniRef90	UniRef90_D1PLA2	Peptidase_M78 domain-containing protein	NA
UHGV-0114492_78	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-0114492_78	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0114492_79	KOfam	K14059	int; integrase	NA
UHGV-0114492_79	PHROG	phrog_1	integrase	integration and excision
UHGV-0114492_79	UniRef90	UniRef90_A0A3E2UZK0	Tyr recombinase domain-containing protein	NA
UHGV-0114492_79	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0114492_79	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0114492_79	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114492_79	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114492_79	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA