UHGV-0114497

Genome information

Genome length 33,422 bps

CDS count 50

Completeness 93.28% (high-quality)

geNomad score 0.9501

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114497
vOTU ID	vOTU-014495
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285970
BioSample	SAMEA4378270
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9501
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.17
Jumbo phage	No

Genome content
Genome length	33,422 bps
GC content	34.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.93%
Average CDS length	625.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114497_1	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0114497_1	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-0114497_1	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0114497_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0114497_2	PHROG	phrog_14404	baseplate protein	tail
UHGV-0114497_2	UniRef90	UniRef90_UPI0018C60488	phage tail protein I	NA
UHGV-0114497_2	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0114497_2	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0114497_2	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0114497_2	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0114497_2	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0114497_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0114497_3	UniRef90	UniRef90_I0GRI6	Putative baseplate protein	NA
UHGV-0114497_3	eggNOG-mapper	927704.SELR_16650	Baseplate J-like protein	NA
UHGV-0114497_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0114497_3	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0114497_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0114497_4	KOfam	K06903	NA	NA
UHGV-0114497_4	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0114497_4	UniRef90	UniRef90_D5EF97	GPW/gp25 family protein	NA
UHGV-0114497_4	eggNOG-mapper	572547.Amico_1105	GPW Gp25 family protein	NA
UHGV-0114497_4	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0114497_4	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0114497_4	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0114497_5	KOfam	K06906	NA	NA
UHGV-0114497_5	PHROG	phrog_76	tail protein	tail
UHGV-0114497_5	UniRef90	UniRef90_A0A098B0B0	Phage P2 GpU	NA
UHGV-0114497_5	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0114497_5	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0114497_5	COG	COG3499	NA	NA
UHGV-0114497_6	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0114497_6	UniRef90	UniRef90_A0A562GHD2	Putative Zn-binding protein involved in type VI secretion	NA
UHGV-0114497_6	eggNOG-mapper	546271.Selsp_1317	PAAR motif	NA
UHGV-0114497_6	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0114497_6	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0114497_7	UniRef90	UniRef90_UPI0018C4C5FA	phage baseplate assembly protein V	NA
UHGV-0114497_7	eggNOG-mapper	857293.CAAU_0812	Baseplate assembly protein	NA
UHGV-0114497_7	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0114497_7	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0114497_8	KOfam	K06905	NA	NA
UHGV-0114497_8	PHROG	phrog_52	tail protein	tail
UHGV-0114497_8	UniRef90	UniRef90_J4UR03	Phage late control protein D protein	NA
UHGV-0114497_8	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0114497_8	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0114497_8	COG	COG3500	NA	NA
UHGV-0114497_8	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0114497_9	PHROG	phrog_46	tail protein	tail
UHGV-0114497_9	UniRef90	UniRef90_A0A6N9P6I0	Phage tail protein	NA
UHGV-0114497_9	eggNOG-mapper	1232443.BAIA02000135_gene1416	Phage Tail Protein X	NA
UHGV-0114497_9	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0114497_9	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0114497_9	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0114497_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0114497_10	UniRef90	UniRef90_UPI001C3B465A	Phage tail tape measure protein	NA
UHGV-0114497_10	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0114497_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114497_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0114497_11	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0114497_11	eggNOG-mapper	1460634.JCM19037_4586	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0114497_11	Structural annotation	PF10109	NA	NA
UHGV-0114497_12	KOfam	K06908	NA	NA
UHGV-0114497_12	PHROG	phrog_55	head closure	connector
UHGV-0114497_12	UniRef90	UniRef90_UPI00156BCE99	phage major tail tube protein	NA
UHGV-0114497_12	eggNOG-mapper	1589751.A0A0C5AJ56_9CAUD	Phage tail tube protein FII	NA
UHGV-0114497_12	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0114497_12	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0114497_13	KOfam	K06907	NA	NA
UHGV-0114497_13	PHROG	phrog_23	tail sheath	tail
UHGV-0114497_13	UniRef90	UniRef90_UPI000F0C053C	phage tail sheath family protein	NA
UHGV-0114497_13	eggNOG-mapper	1280706.AUJE01000010_gene665	COG3497 Phage tail sheath protein FI	NA
UHGV-0114497_13	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0114497_13	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0114497_15	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0114497_15	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0114497_16	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0114497_16	UniRef90	UniRef90_A0A0U9HC01	Prophage minor tail protein Z	NA
UHGV-0114497_16	eggNOG-mapper	349161.Dred_1209	Prophage minor tail protein Z (GPZ)	NA
UHGV-0114497_16	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0114497_16	Structural annotation	PF06763	NA	NA
UHGV-0114497_17	PHROG	phrog_2551	minor tail protein	tail
UHGV-0114497_17	UniRef90	UniRef90_A0A067ZJA6	ATP-binding sugar transporter family protein	NA
UHGV-0114497_17	eggNOG-mapper	1273103.NM10_02242	NA	NA
UHGV-0114497_17	Structural annotation	PF13856	NA	NA
UHGV-0114497_18	PHROG	phrog_122	head decoration	head and packaging
UHGV-0114497_18	UniRef90	UniRef90_UPI00047A5DFE	NA	NA
UHGV-0114497_18	eggNOG-mapper	935948.KE386495_gene1187	NA	NA
UHGV-0114497_18	Pfam	PF09956	NA	DUF2190
UHGV-0114497_18	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0114497_18	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0114497_19	KOfam	K06904	NA	NA
UHGV-0114497_19	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0114497_19	UniRef90	UniRef90_UPI00047C97B6	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0114497_19	eggNOG-mapper	935948.KE386495_gene1188	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0114497_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114497_19	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0114497_19	COG	COG3087	Cell division protein FtsN	NA
UHGV-0114497_19	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0114497_20	PHROG	phrog_21	portal protein	head and packaging
UHGV-0114497_20	UniRef90	UniRef90_UPI001CA41D49	phage portal protein	NA
UHGV-0114497_20	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-0114497_20	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0114497_20	COG	COG5511	Phage capsid protein	NA
UHGV-0114497_21	PHROG	phrog_21	portal protein	head and packaging
UHGV-0114497_21	UniRef90	UniRef90_UPI001CA39259	phage portal protein	NA
UHGV-0114497_21	eggNOG-mapper	883156.HMPREF9282_01238	Phage portal protein, lambda family	NA
UHGV-0114497_21	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0114497_21	COG	COG5511	Phage capsid protein	NA
UHGV-0114497_21	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0114497_22	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0114497_22	eggNOG-mapper	935948.KE386495_gene1190	NA	NA
UHGV-0114497_22	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0114497_23	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0114497_23	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0114497_23	UniRef90	UniRef90_UPI001E621E89	phage terminase large subunit family protein	NA
UHGV-0114497_23	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0114497_23	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0114497_23	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0114497_23	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0114497_23	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0114497_24	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0114497_24	UniRef90	UniRef90_UPI001E630431	terminase small subunit	NA
UHGV-0114497_24	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0114497_24	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0114497_24	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0114497_25	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-0114497_26	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0114497_27	eggNOG-mapper	478749.BRYFOR_07980	NA	NA
UHGV-0114497_27	Pfam	PF20469	Overcoming lysogenization defect protein-like, TOPRIM domain	OLD-like_TOPRIM
UHGV-0114497_28	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0114497_28	PHROG	phrog_5836	NA	unknown function
UHGV-0114497_28	UniRef90	UniRef90_A0A1C6FR99	Predicted ATPase	NA
UHGV-0114497_28	eggNOG-mapper	994573.T472_0203820	AAA ATPase domain	NA
UHGV-0114497_28	PADLOC	AAA_21	NA	NA
UHGV-0114497_28	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0114497_28	COG	COG4637	Predicted ATPase	NA
UHGV-0114497_28	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-0114497_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114497_29	UniRef90	UniRef90_UPI0019573AC2	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0114497_29	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0114497_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114497_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0114497_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114497_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114497_31	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-0114497_31	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0114497_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114497_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114497_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114497_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114497_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0114497_36	PHROG	phrog_13202	NA	unknown function
UHGV-0114497_36	eggNOG-mapper	697284.ERIC2_c10640	NA	NA
UHGV-0114497_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0114497_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0114497_38	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-0114497_38	eggNOG-mapper	1122216.AUHW01000001_gene673	Participates in initiation and elongation during chromosome replication	NA
UHGV-0114497_38	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0114497_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0114497_38	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-0114497_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114497_38	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0114497_39	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0114497_39	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0114497_39	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0114497_39	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0114497_39	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0114497_39	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0114497_39	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0114497_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114497_39	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0114497_43	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0114497_43	UniRef90	UniRef90_UPI001D088355	helix-turn-helix transcriptional regulator	NA
UHGV-0114497_43	eggNOG-mapper	536233.CLO_1403	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114497_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114497_43	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0114497_43	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0114497_44	UniRef90	UniRef90_UPI001CD1D830	helix-turn-helix transcriptional regulator	NA
UHGV-0114497_44	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114497_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0114497_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114497_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114497_45	UniRef90	UniRef90_UPI001CD48953	helix-turn-helix transcriptional regulator	NA
UHGV-0114497_45	eggNOG-mapper	1121121.KB894312_gene3203	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114497_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114497_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114497_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114497_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114497_46	UniRef90	UniRef90_UPI001D0627D7	helix-turn-helix transcriptional regulator	NA
UHGV-0114497_46	eggNOG-mapper	588581.Cpap_0877	helix-turn-helix	NA
UHGV-0114497_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114497_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114497_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114497_47	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0114497_47	PHROG	phrog_3989	NA	unknown function
UHGV-0114497_47	UniRef90	UniRef90_A0A1W1VQD2	BRCA1 C Terminus (BRCT) domain-containing protein	NA
UHGV-0114497_47	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0114497_47	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0114497_47	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0114497_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0114497_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0114497_48	UniRef90	UniRef90_A0A355A5I1	AAA_31 domain-containing protein	NA
UHGV-0114497_48	eggNOG-mapper	457405.FSDG_01237	plasmid maintenance	NA
UHGV-0114497_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-0114497_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0114497_48	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0114497_49	PHROG	phrog_6264	NA	unknown function