UHGV-0114541

Genome information

Genome length 27,766 bps

CDS count 52

Completeness 79.07% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114541
vOTU ID	vOTU-041543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308458
BioSample	SAMEA37064668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.1
Jumbo phage	No

Genome content
Genome length	27,766 bps
GC content	39.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.86%
Average CDS length	491.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114541_1	eggNOG-mapper	511680.BUTYVIB_01634	NA	NA
UHGV-0114541_1	Structural annotation	PF02701	NA	NA
UHGV-0114541_2	UniRef90	UniRef90_UPI001BBA5CF0	Helix-turn-helix transcriptional regulator	NA
UHGV-0114541_2	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114541_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114541_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114541_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0114541_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114541_4	UniRef90	UniRef90_A0A4R4FGI2	XRE family transcriptional regulator	NA
UHGV-0114541_4	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0114541_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0114541_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114541_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114541_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114541_5	PHROG	phrog_28456	NA	unknown function
UHGV-0114541_6	PHROG	phrog_585	NA	unknown function
UHGV-0114541_6	UniRef90	UniRef90_UPI001897C570	NA	NA
UHGV-0114541_6	eggNOG-mapper	438780.D2KRD9_9CAUD	NA	NA
UHGV-0114541_6	Pfam	PF10711	NA	DUF2513
UHGV-0114541_6	Structural annotation	PF10711, TIGR03433, COG1695	NA	NA
UHGV-0114541_14	UniRef90	UniRef90_A0A894KJ06	Type II secretory pathway component PulF-like protein	NA
UHGV-0114541_15	UniRef90	UniRef90_A0A894K899	Putative geraniol 8-hydroxylase	NA
UHGV-0114541_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114541_17	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0114541_17	Structural annotation	PF21578	NA	NA
UHGV-0114541_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0114541_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0114541_18	UniRef90	UniRef90_A0A894KKE1	RNase H type-1 domain-containing protein	NA
UHGV-0114541_18	eggNOG-mapper	697281.Mahau_1396	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0114541_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0114541_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0114541_19	PHROG	phrog_17690	NA	unknown function
UHGV-0114541_20	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0114541_20	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0114541_20	UniRef90	UniRef90_A0A174J3W3	LexA repressor	NA
UHGV-0114541_20	eggNOG-mapper	545697.HMPREF0216_00360	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0114541_20	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0114541_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0114541_20	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-0114541_21	PHROG	phrog_10192	NA	unknown function
UHGV-0114541_22	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114541_22	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0114541_22	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0114541_24	eggNOG-mapper	1298920.KI911353_gene2704	NA	NA
UHGV-0114541_26	PHROG	phrog_15198	NA	unknown function
UHGV-0114541_26	UniRef90	UniRef90_UPI00046759AC	NA	NA
UHGV-0114541_26	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0114541_27	KOfam	K03744	lemA; LemA protein	NA
UHGV-0114541_27	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0114541_27	UniRef90	UniRef90_A0A6M5GAR0	LemA family protein	NA
UHGV-0114541_27	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0114541_27	Pfam	PF04011	LemA family	LemA
UHGV-0114541_27	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0114541_27	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0114541_28	PHROG	phrog_3886	NA	unknown function
UHGV-0114541_28	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0114541_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114541_30	UniRef90	UniRef90_A0A3A6C6E7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0114541_30	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-0114541_30	Pfam	PF07374	NA	DUF1492
UHGV-0114541_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114541_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0114541_31	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114541_31	UniRef90	UniRef90_UPI00196116DA	HNH endonuclease	NA
UHGV-0114541_31	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0114541_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114541_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114541_31	Structural annotation	PF01844	NA	NA
UHGV-0114541_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-0114541_32	UniRef90	UniRef90_A0A1C5MKT6	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114541_32	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114541_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0114541_33	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0114541_33	UniRef90	UniRef90_A0A1C5MKJ0	Ntox50 domain-containing protein	NA
UHGV-0114541_33	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-0114541_35	PHROG	phrog_17688	NA	unknown function
UHGV-0114541_35	UniRef90	UniRef90_A0A1C5Y909	Phage terminase-like protein, large subunit	NA
UHGV-0114541_35	eggNOG-mapper	665950.HMPREF1025_02532	phage terminase, large subunit	NA
UHGV-0114541_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114541_35	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0114541_36	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0114541_36	UniRef90	UniRef90_UPI001961E2FD	NA	NA
UHGV-0114541_36	eggNOG-mapper	665950.HMPREF1025_02531	NA	NA
UHGV-0114541_36	Pfam	PF14265	NA	DUF4355
UHGV-0114541_36	Structural annotation	PF14265	NA	NA
UHGV-0114541_37	PHROG	phrog_32396	NA	unknown function
UHGV-0114541_37	UniRef90	UniRef90_A0A1C5MLP2	Phage capsid family	NA
UHGV-0114541_37	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-0114541_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114541_39	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0114541_39	UniRef90	UniRef90_A0A1C5MM07	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0114541_39	eggNOG-mapper	12390.Q77MV1_9CAUD	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0114541_39	Pfam	PF09355	NA	Phage_Gp19
UHGV-0114541_39	Structural annotation	PF09355	NA	NA
UHGV-0114541_40	PHROG	phrog_501	head closure Hc1	connector
UHGV-0114541_40	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0114541_40	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0114541_40	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0114541_41	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0114541_42	PHROG	phrog_123	tail terminator	connector
UHGV-0114541_42	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0114541_42	Structural annotation	PF06141	NA	NA
UHGV-0114541_43	PHROG	phrog_117	major tail protein	tail
UHGV-0114541_43	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-0114541_43	eggNOG-mapper	665950.HMPREF1025_02525	domain, Protein	NA
UHGV-0114541_43	COG	COG5492	NA	NA
UHGV-0114541_43	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0114541_44	PHROG	phrog_1526	NA	unknown function
UHGV-0114541_44	UniRef90	UniRef90_A0A380KP73	NA	NA
UHGV-0114541_44	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0114541_45	PHROG	phrog_1633	NA	unknown function
UHGV-0114541_45	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-0114541_45	eggNOG-mapper	665950.HMPREF1025_02523	NA	NA
UHGV-0114541_45	Pfam	PF17318	NA	DUF5361
UHGV-0114541_45	Structural annotation	PF17318	NA	NA
UHGV-0114541_46	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0114541_46	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-0114541_46	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0114541_46	COG	COG1511	NA	NA
UHGV-0114541_46	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0114541_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114541_47	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0114541_47	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0114541_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0114541_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0114541_48	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0114541_48	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-0114541_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0114541_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0114541_49	PHROG	phrog_9994	NA	unknown function
UHGV-0114541_49	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0114541_49	eggNOG-mapper	411468.CLOSCI_02412	NA	NA
UHGV-0114541_49	Structural annotation	PF20747, PF16990	NA	NA
UHGV-0114541_50	PHROG	phrog_12931	NA	unknown function
UHGV-0114541_50	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0114541_50	Structural annotation	PF17642	NA	NA
UHGV-0114541_51	PHROG	phrog_1382	NA	unknown function
UHGV-0114541_51	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0114541_51	Structural annotation	NF040910	NA	NA
UHGV-0114541_52	PHROG	phrog_16164	NA	unknown function
UHGV-0114541_52	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0114541_52	Structural annotation	PF10651, NF032891	NA	NA