UHGV-0114619

Genome information

Genome length 33,828 bps

CDS count 48

Completeness 87.78% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114619
vOTU ID	vOTU-039776
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296983
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.81
Jumbo phage	No

Genome content
Genome length	33,828 bps
GC content	53.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.28%
Average CDS length	675.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114619_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114619_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0114619_1	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-0114619_1	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0114619_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114619_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114619_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114619_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114619_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0114619_2	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0114619_2	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0114619_2	UniRef90	UniRef90_A0A3A6JY26	NA	NA
UHGV-0114619_2	eggNOG-mapper	665956.HMPREF1032_00984	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0114619_2	PADLOC	SspH_00004	SspH	SSP
UHGV-0114619_2	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0114619_2	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0114619_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0114619_2	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0114619_3	PHROG	phrog_1914	NA	unknown function
UHGV-0114619_3	UniRef90	UniRef90_G9RRJ0	Peptidase_M78 domain-containing protein	NA
UHGV-0114619_3	eggNOG-mapper	665956.HMPREF1032_03592	NA	NA
UHGV-0114619_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114619_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0114619_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0114619_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114619_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114619_4	UniRef90	UniRef90_A0A3A6JSY4	XRE family transcriptional regulator	NA
UHGV-0114619_4	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114619_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114619_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114619_4	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0114619_5	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0114619_5	UniRef90	UniRef90_G9RRJ1	Excisionase family DNA binding domain-containing protein	NA
UHGV-0114619_5	eggNOG-mapper	1218173.BALCAV_0221205	Helix-turn-helix domain	NA
UHGV-0114619_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114619_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0114619_9	PHROG	phrog_1733	NA	unknown function
UHGV-0114619_9	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-0114619_9	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0114619_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0114619_9	Structural annotation	PF03677	NA	NA
UHGV-0114619_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0114619_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114619_11	UniRef90	UniRef90_G9RRJ7	AAA_23 domain-containing protein	NA
UHGV-0114619_11	eggNOG-mapper	665956.HMPREF1032_03599	nuclear chromosome segregation	NA
UHGV-0114619_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0114619_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0114619_12	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114619_12	UniRef90	UniRef90_A0A4R1QSH1	RecT family protein	NA
UHGV-0114619_12	eggNOG-mapper	665956.HMPREF1032_03600	NA	NA
UHGV-0114619_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0114619_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0114619_13	UniRef90	UniRef90_UPI001066B38E	MBL fold metallo-hydrolase	NA
UHGV-0114619_13	eggNOG-mapper	665956.HMPREF1032_03601	Metallo-beta-lactamase superfamily	NA
UHGV-0114619_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0114619_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0114619_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0114619_14	PHROG	phrog_36563	NA	unknown function
UHGV-0114619_14	eggNOG-mapper	665956.HMPREF1032_03602	NA	NA
UHGV-0114619_15	PHROG	phrog_16304	NA	unknown function
UHGV-0114619_15	UniRef90	UniRef90_G9RRK1	NA	NA
UHGV-0114619_15	Pfam	PF19808	NA	DUF6291
UHGV-0114619_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114619_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0114619_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114619_16	UniRef90	UniRef90_A0A133ZRU5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0114619_16	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-0114619_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0114619_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0114619_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0114619_18	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0114619_19	PHROG	phrog_38832	NA	unknown function
UHGV-0114619_19	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0114619_20	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0114619_20	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0114619_20	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0114619_21	UniRef90	UniRef90_A0A7G9WJW0	Lar family restriction alleviation protein	NA
UHGV-0114619_21	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0114619_26	UniRef90	UniRef90_UPI0019673783	helix-turn-helix domain-containing protein	NA
UHGV-0114619_27	UniRef90	UniRef90_A0A1Y4RM01	RNA polymerase subunit sigma-70	NA
UHGV-0114619_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0114619_27	Structural annotation	PF04545	NA	NA
UHGV-0114619_28	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114619_28	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0114619_28	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0114619_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114619_29	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0114619_29	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0114619_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0114619_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114619_29	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0114619_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-0114619_30	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-0114619_30	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114619_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0114619_31	PHROG	phrog_13257	head maturation protease	head and packaging
UHGV-0114619_31	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0114619_31	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0114619_31	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0114619_31	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0114619_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114619_32	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-0114619_32	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0114619_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114619_32	Structural annotation	PF06810	NA	NA
UHGV-0114619_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114619_33	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0114619_33	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0114619_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114619_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114619_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114619_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114619_35	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0114619_35	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0114619_35	Structural annotation	PF09355	NA	NA
UHGV-0114619_36	PHROG	phrog_501	head closure Hc1	connector
UHGV-0114619_36	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0114619_36	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0114619_37	PHROG	phrog_387	neck protein	connector
UHGV-0114619_37	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0114619_37	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0114619_38	PHROG	phrog_123	tail terminator	connector
UHGV-0114619_38	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0114619_38	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0114619_38	Structural annotation	PF06141	NA	NA
UHGV-0114619_39	PHROG	phrog_117	major tail protein	tail
UHGV-0114619_39	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-0114619_39	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0114619_39	COG	COG5492	NA	NA
UHGV-0114619_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0114619_40	PHROG	phrog_1526	NA	unknown function
UHGV-0114619_40	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0114619_41	PHROG	phrog_1633	NA	unknown function
UHGV-0114619_41	UniRef90	UniRef90_UPI001939D555	NA	NA
UHGV-0114619_41	eggNOG-mapper	1321372.AQQB01000060_gene71	NA	NA
UHGV-0114619_41	Pfam	PF17318	NA	DUF5361
UHGV-0114619_41	Structural annotation	PF17318	NA	NA
UHGV-0114619_42	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0114619_42	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0114619_42	eggNOG-mapper	873448.STRPO_0294	phage tail tape measure protein	NA
UHGV-0114619_42	COG	COG5412	Phage-related protein	NA
UHGV-0114619_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0114619_43	UniRef90	UniRef90_UPI001C38BAFE	tape measure protein	NA
UHGV-0114619_43	eggNOG-mapper	1121864.OMO_02161	tape measure	NA
UHGV-0114619_43	COG	COG5412	Phage-related protein	NA
UHGV-0114619_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114619_44	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-0114619_44	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0114619_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0114619_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0114619_45	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0114619_45	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0114619_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0114619_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0114619_46	PHROG	phrog_9534	head protein	head and packaging
UHGV-0114619_46	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0114619_46	Structural annotation	PF20747	NA	NA
UHGV-0114619_47	Structural annotation	PF21253, NF038128	NA	NA