UHGV-0114667

Genome information

Genome length 56,384 bps

CDS count 77

Completeness 97.23% (high-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114667
vOTU ID	vOTU-071594
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286735
BioSample	SAMEA4378282
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.9
Jumbo phage	No

Genome content
Genome length	56,384 bps
GC content	37.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	88.06%
Average CDS length	647.22 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114667_4	eggNOG-mapper	877415.JNJQ01000002_gene2327	NA	NA
UHGV-0114667_4	AcrCatalog	cluster_2172	NA	NA
UHGV-0114667_5	UniRef90	UniRef90_A0A898FSI4	CHAP domain-containing protein	NA
UHGV-0114667_5	eggNOG-mapper	658659.HMPREF0983_03290	lysozyme activity	NA
UHGV-0114667_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0114667_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0114667_5	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0114667_6	eggNOG-mapper	1211844.CBLM010000023_gene975	NA	NA
UHGV-0114667_7	PHROG	phrog_443	holin	lysis
UHGV-0114667_7	UniRef90	UniRef90_UPI001C37FC92	holin	NA
UHGV-0114667_7	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0114667_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0114667_7	Structural annotation	PF16945	NA	NA
UHGV-0114667_8	PHROG	phrog_16267	NA	unknown function
UHGV-0114667_8	UniRef90	UniRef90_UPI0006C02713	tail fiber domain-containing protein	NA
UHGV-0114667_8	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0114667_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0114667_8	COG	COG4926	Phage-related protein	NA
UHGV-0114667_8	Structural annotation	PF05113, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-0114667_9	PHROG	phrog_1401	NA	unknown function
UHGV-0114667_9	Structural annotation	PF07761	NA	NA
UHGV-0114667_11	PHROG	phrog_1194	NA	unknown function
UHGV-0114667_11	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0114667_11	Pfam	PF20458	NA	DUF6711
UHGV-0114667_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0114667_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114667_12	UniRef90	UniRef90_A8RD17	Cation diffusion facilitator family transporter	NA
UHGV-0114667_12	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0114667_12	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0114667_14	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0114667_14	UniRef90	UniRef90_UPI001C706556	Rha family transcriptional regulator	NA
UHGV-0114667_14	eggNOG-mapper	552396.HMPREF0863_00753	AntA/AntB antirepressor	NA
UHGV-0114667_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0114667_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0114667_14	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0114667_14	Structural annotation	PF03374, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0114667_15	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-0114667_15	UniRef90	UniRef90_V6Z4C2	Antirepressor	NA
UHGV-0114667_15	eggNOG-mapper	1154860.SAG0136_07890	COG3617 Prophage antirepressor	NA
UHGV-0114667_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0114667_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0114667_15	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-0114667_17	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0114667_17	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0114667_17	UniRef90	UniRef90_UPI001E475A96	helix-turn-helix transcriptional regulator	NA
UHGV-0114667_17	eggNOG-mapper	649747.HMPREF0083_00501	Transcriptional regulator	NA
UHGV-0114667_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114667_17	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0114667_18	PHROG	phrog_2546	NA	unknown function
UHGV-0114667_18	eggNOG-mapper	552396.HMPREF0863_04117	NA	NA
UHGV-0114667_21	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0114667_22	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0114667_23	eggNOG-mapper	1235800.C819_00481	NA	NA
UHGV-0114667_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0114667_25	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0114667_26	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0114667_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0114667_28	UniRef90	UniRef90_UPI000CDB6260	major capsid protein	NA
UHGV-0114667_28	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0114667_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0114667_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0114667_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-0114667_29	eggNOG-mapper	476272.RUMHYD_01945	NA	NA
UHGV-0114667_30	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0114667_30	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0114667_30	Structural annotation	PF14265	NA	NA
UHGV-0114667_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0114667_31	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0114667_31	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114667_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114667_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0114667_32	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0114667_32	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-0114667_32	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0114667_32	COG	COG5410	NA	NA
UHGV-0114667_32	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0114667_33	PHROG	phrog_419	NA	unknown function
UHGV-0114667_33	UniRef90	UniRef90_A0A0I7PZA1	NA	NA
UHGV-0114667_33	eggNOG-mapper	33035.JPJF01000093_gene2254	NA	NA
UHGV-0114667_33	Structural annotation	PF14083	NA	NA
UHGV-0114667_34	PHROG	phrog_1048	NA	unknown function
UHGV-0114667_34	UniRef90	UniRef90_UPI001D02F1DD	NA	NA
UHGV-0114667_34	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0114667_34	Pfam	PF11195	NA	DUF2829
UHGV-0114667_34	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0114667_34	Structural annotation	PF11195	NA	NA
UHGV-0114667_36	eggNOG-mapper	509191.AEDB02000062_gene423	NA	NA
UHGV-0114667_36	Structural annotation	PF13601, NF040939	NA	NA
UHGV-0114667_37	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0114667_37	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0114667_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114667_40	Pfam	PF20323	NA	DUF6618
UHGV-0114667_40	Structural annotation	PF20323	NA	NA
UHGV-0114667_41	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0114667_41	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0114667_41	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0114667_41	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0114667_45	Structural annotation	PF08281, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0114667_47	PHROG	phrog_12834	NA	unknown function
UHGV-0114667_47	eggNOG-mapper	1123013.AUIC01000006_gene1279	NA	NA
UHGV-0114667_47	Structural annotation	PF07065, MF_00047, NF004085, COG1181	NA	NA
UHGV-0114667_48	Structural annotation	PF04319, TIGR00686	NA	NA
UHGV-0114667_50	UniRef90	UniRef90_UPI00115AD30A	NA	NA
UHGV-0114667_50	Pfam	PF04448	NA	DUF551
UHGV-0114667_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114667_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114667_51	UniRef90	UniRef90_A0A099I4V0	Single-stranded DNA-binding protein	NA
UHGV-0114667_51	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0114667_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114667_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114667_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114667_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114667_51	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114667_52	PHROG	phrog_874	NA	unknown function
UHGV-0114667_52	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0114667_52	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0114667_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0114667_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0114667_54	PHROG	phrog_12862	NA	unknown function
UHGV-0114667_54	UniRef90	UniRef90_G1VS50	Methyltransferase	NA
UHGV-0114667_54	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0114667_54	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0114667_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0114667_54	COG	COG0863	DNA modification methylase	NA
UHGV-0114667_54	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0114667_55	PHROG	phrog_8470	NA	unknown function
UHGV-0114667_55	UniRef90	UniRef90_UPI0015F6201C	PcfJ domain-containing protein	NA
UHGV-0114667_55	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-0114667_55	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0114667_55	Structural annotation	PF14284	NA	NA
UHGV-0114667_56	PHROG	phrog_7445	NA	unknown function
UHGV-0114667_56	UniRef90	UniRef90_UPI0015F68451	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0114667_56	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-0114667_56	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0114667_56	Structural annotation	PF14058	NA	NA
UHGV-0114667_57	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0114667_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0114667_57	UniRef90	UniRef90_A0A3N2LBX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0114667_57	eggNOG-mapper	908340.HMPREF9406_1086	NA	NA
UHGV-0114667_57	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0114667_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0114667_59	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0114667_59	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114667_59	UniRef90	UniRef90_UPI00163D4A7C	ATP-binding protein	NA
UHGV-0114667_59	eggNOG-mapper	1211844.CBLM010000016_gene1509	NA	NA
UHGV-0114667_59	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0114667_59	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0114667_59	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0114667_60	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0114667_60	UniRef90	UniRef90_UPI0011A07169	conserved phage C-terminal domain-containing protein	NA
UHGV-0114667_60	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0114667_60	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0114667_60	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0114667_60	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114667_60	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0114667_62	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0114667_62	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114667_62	UniRef90	UniRef90_A0A7G9GLS4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0114667_62	eggNOG-mapper	264198.Reut_A2384	Endodeoxyribonuclease RusA	NA
UHGV-0114667_62	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0114667_62	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0114667_62	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0114667_63	PHROG	phrog_1029	NA	unknown function
UHGV-0114667_63	eggNOG-mapper	1232449.BAHV02000016_gene1838	NA	NA
UHGV-0114667_63	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0114667_64	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0114667_64	UniRef90	UniRef90_UPI001C0ED106	replication terminator protein	NA
UHGV-0114667_64	eggNOG-mapper	1486428.A0A097BY30_9CAUD	NA	NA
UHGV-0114667_66	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0114667_66	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0114667_66	UniRef90	UniRef90_A0A223MJW4	Lactamase_B domain-containing protein	NA
UHGV-0114667_66	eggNOG-mapper	537013.CLOSTMETH_01716	Metallo-beta-lactamase superfamily	NA
UHGV-0114667_66	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0114667_66	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0114667_66	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0114667_67	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0114667_67	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114667_67	UniRef90	UniRef90_UPI000F797C57	recombinase RecT	NA
UHGV-0114667_67	eggNOG-mapper	1336234.JAGN01000004_gene545	NA	NA
UHGV-0114667_67	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0114667_68	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0114667_68	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114667_68	UniRef90	UniRef90_A0A6N7S5U7	AAA family ATPase	NA
UHGV-0114667_68	eggNOG-mapper	537013.CLOSTMETH_01714	nuclear chromosome segregation	NA
UHGV-0114667_68	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0114667_68	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0114667_72	PHROG	phrog_989	NA	unknown function
UHGV-0114667_72	UniRef90	UniRef90_UPI001E5628F7	MarR family transcriptional regulator	NA
UHGV-0114667_72	eggNOG-mapper	1504823.CCMM01000012_gene1963	NA	NA
UHGV-0114667_74	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0114667_74	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0114667_74	UniRef90	UniRef90_A0A223MJW9	Toxin Bro	NA
UHGV-0114667_74	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0114667_74	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0114667_74	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0114667_74	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0114667_75	UniRef90	UniRef90_A0A223MJG5	Transcriptional regulator	NA
UHGV-0114667_75	eggNOG-mapper	1504823.CCMM01000008_gene1079	sequence-specific DNA binding	NA
UHGV-0114667_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114667_75	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114667_75	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114667_76	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0114667_76	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114667_76	UniRef90	UniRef90_A0A223MJ37	HTH cro/C1-type domain-containing protein	NA
UHGV-0114667_76	eggNOG-mapper	1273103.NM10_02407	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0114667_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114667_76	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0114667_76	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0114667_76	Structural annotation	PF00717, PF01381, MF_00015, MF_00535, TIGR00498, NF041951, COG1974	NA	NA
UHGV-0114667_77	KOfam	K14059	int; integrase	NA
UHGV-0114667_77	PHROG	phrog_1	integrase	integration and excision
UHGV-0114667_77	UniRef90	UniRef90_UPI001158001B	tyrosine-type recombinase/integrase	NA
UHGV-0114667_77	eggNOG-mapper	140626.JHWB01000016_gene2528	Belongs to the 'phage' integrase family	NA
UHGV-0114667_77	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114667_77	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114667_77	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA