UHGV-0114670

Genome information

Genome length 34,810 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114670
vOTU ID	vOTU-076787
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286736
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.01
Jumbo phage	No

Genome content
Genome length	34,810 bps
GC content	42.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	88.63%
Average CDS length	488.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114670_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0114670_4	PHROG	phrog_6745	endolysin	lysis
UHGV-0114670_4	UniRef90	UniRef90_A0A1B3WCU6	Glycosyl hydrolase family 25	NA
UHGV-0114670_4	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0114670_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0114670_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0114670_4	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0114670_5	UniRef90	UniRef90_A0A1G5VKB0	Bacteriophage holin family protein	NA
UHGV-0114670_5	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0114670_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0114670_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0114670_7	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0114670_8	KOfam	K14059	int; integrase	NA
UHGV-0114670_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0114670_8	UniRef90	UniRef90_S7J9K9	Site-specific tyrosine recombinase XerC	NA
UHGV-0114670_8	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0114670_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114670_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114670_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0114670_10	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0114670_10	Structural annotation	NF012201	NA	NA
UHGV-0114670_11	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0114670_11	UniRef90	UniRef90_UPI0018C5ACB1	phage tail protein	NA
UHGV-0114670_11	eggNOG-mapper	1401067.HMPREF0872_00205	tail collar domain protein	NA
UHGV-0114670_11	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0114670_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0114670_11	Structural annotation	PF12571	NA	NA
UHGV-0114670_12	PHROG	phrog_521	tail protein	tail
UHGV-0114670_12	UniRef90	UniRef90_UPI000F8F3D10	NA	NA
UHGV-0114670_12	eggNOG-mapper	883156.HMPREF9282_00966	NA	NA
UHGV-0114670_12	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0114670_12	COG	COG3778	NA	NA
UHGV-0114670_13	PHROG	phrog_6	baseplate protein	tail
UHGV-0114670_13	UniRef90	UniRef90_A0A8E4BRX6	Phage-like element PBSX protein XkdT	NA
UHGV-0114670_13	eggNOG-mapper	1111454.HMPREF1250_0199	Baseplate J-like protein	NA
UHGV-0114670_13	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0114670_13	COG	COG3299	NA	NA
UHGV-0114670_13	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0114670_14	PHROG	phrog_120	baseplate protein	tail
UHGV-0114670_14	UniRef90	UniRef90_UPI00195EB78C	NA	NA
UHGV-0114670_14	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0114670_14	Pfam	PF10934	NA	DUF2634
UHGV-0114670_14	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0114670_14	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0114670_15	PHROG	phrog_579	NA	unknown function
UHGV-0114670_15	UniRef90	UniRef90_UPI000F8F13CB	NA	NA
UHGV-0114670_15	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0114670_15	Pfam	PF10844	NA	DUF2577
UHGV-0114670_15	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0114670_16	PHROG	phrog_400	tail protein	tail
UHGV-0114670_16	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0114670_16	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0114670_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114670_16	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0114670_17	PHROG	phrog_5184	NA	unknown function
UHGV-0114670_17	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0114670_17	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0114670_17	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0114670_17	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0114670_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0114670_18	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-0114670_18	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0114670_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114670_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114670_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0114670_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114670_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0114670_20	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0114670_20	eggNOG-mapper	1151292.QEW_0424	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0114670_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0114670_20	Structural annotation	PF08890	NA	NA
UHGV-0114670_21	PHROG	phrog_365	tail protein	tail
UHGV-0114670_21	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-0114670_21	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0114670_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0114670_21	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0114670_22	PHROG	phrog_1480	tail sheath	tail
UHGV-0114670_22	UniRef90	UniRef90_A0A8D5A277	Phage portal protein	NA
UHGV-0114670_22	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0114670_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0114670_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0114670_22	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0114670_23	PHROG	phrog_525	NA	unknown function
UHGV-0114670_23	eggNOG-mapper	1449126.JQKL01000051_gene3165	NA	NA
UHGV-0114670_23	Pfam	PF20765	NA	DUF6838
UHGV-0114670_23	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0114670_24	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-0114670_24	eggNOG-mapper	393480.FNP_1691	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0114670_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114670_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0114670_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0114670_25	UniRef90	UniRef90_A0A496PEF8	Head-tail adaptor protein	NA
UHGV-0114670_25	eggNOG-mapper	1396.DJ87_981	Phage head-tail joining protein	NA
UHGV-0114670_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0114670_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0114670_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0114670_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114670_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0114670_26	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-0114670_26	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0114670_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0114670_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0114670_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0114670_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114670_27	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-0114670_27	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0114670_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114670_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114670_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114670_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114670_28	KOfam	K06904	NA	NA
UHGV-0114670_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0114670_28	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-0114670_28	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0114670_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114670_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0114670_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0114670_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0114670_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114670_29	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-0114670_29	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0114670_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114670_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114670_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114670_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114670_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114670_30	UniRef90	UniRef90_A0A8D4UU77	Terminase	NA
UHGV-0114670_30	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0114670_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114670_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114670_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114670_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0114670_31	PHROG	phrog_1066	NA	unknown function
UHGV-0114670_31	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0114670_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0114670_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114670_32	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-0114670_32	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0114670_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114670_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114670_33	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0114670_33	UniRef90	UniRef90_C9LP91	HTH_59 domain-containing protein	NA
UHGV-0114670_33	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-0114670_33	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0114670_33	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0114670_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114670_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114670_38	UniRef90	UniRef90_R7PT35	Single-stranded DNA-binding protein	NA
UHGV-0114670_38	eggNOG-mapper	888062.HMPREF9083_1032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0114670_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114670_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114670_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114670_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114670_38	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0114670_40	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0114670_40	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0114670_40	UniRef90	UniRef90_A0A162J7A6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0114670_40	eggNOG-mapper	1408415.JHXL01000005_gene790	dUTP diphosphatase activity	NA
UHGV-0114670_40	Pfam	PF00692	dUTPase	dUTPase
UHGV-0114670_40	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0114670_40	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0114670_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0114670_44	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114670_44	UniRef90	UniRef90_A0A3E3E0Z5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0114670_44	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0114670_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0114670_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0114670_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0114670_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114670_45	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0114670_45	Structural annotation	PF21578	NA	NA
UHGV-0114670_47	eggNOG-mapper	1203606.HMPREF1526_00222	NA	NA
UHGV-0114670_50	PHROG	phrog_14367	NA	unknown function
UHGV-0114670_50	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-0114670_50	eggNOG-mapper	568816.Acin_1857	LysM domain	NA
UHGV-0114670_50	Pfam	PF01476	LysM domain	LysM
UHGV-0114670_50	COG	COG1388	LysM repeat	NA
UHGV-0114670_51	PHROG	phrog_1877	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114670_51	UniRef90	UniRef90_A0A848BR63	Helix-turn-helix domain-containing protein	NA
UHGV-0114670_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114670_51	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0114670_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0114670_57	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0114670_57	UniRef90	UniRef90_UPI00036CB38A	Arc family DNA-binding protein	NA
UHGV-0114670_57	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0114670_57	COG	COG4691	Plasmid stability protein StbC1, contains ribbon-helix-helix domain	NA
UHGV-0114670_57	Structural annotation	PF03869, NF041793, COG4877	NA	NA
UHGV-0114670_58	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0114670_59	UniRef90	UniRef90_G0VPY2	HTH cro/C1-type domain-containing protein	NA
UHGV-0114670_59	eggNOG-mapper	1064535.MELS_1289	NA	NA
UHGV-0114670_59	Pfam	PF05339	NA	DUF739
UHGV-0114670_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0114670_59	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0114670_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114670_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114670_60	UniRef90	UniRef90_G0VPY1	Transcriptional repressor	NA
UHGV-0114670_60	eggNOG-mapper	1064535.MELS_1288	sequence-specific DNA binding	NA
UHGV-0114670_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114670_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114670_60	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0114670_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114670_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114670_61	UniRef90	UniRef90_UPI00142F4E06	helix-turn-helix domain-containing protein	NA
UHGV-0114670_61	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114670_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114670_61	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114670_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114670_61	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0114670_62	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0114670_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114670_62	UniRef90	UniRef90_A0A346AWV7	Helix-turn-helix domain-containing protein	NA
UHGV-0114670_62	eggNOG-mapper	679201.HMPREF9334_00294	sequence-specific DNA binding	NA
UHGV-0114670_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114670_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114670_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0114670_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114670_63	UniRef90	UniRef90_A0A396PIB8	XRE family transcriptional regulator	NA
UHGV-0114670_63	eggNOG-mapper	190478.Q8SBN0_9CAUD	sequence-specific DNA binding	NA
UHGV-0114670_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114670_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114670_63	Structural annotation	PF01381, PF21291, NF041951, TIGR02607, COG3655, COG1476	NA	NA
UHGV-0114670_64	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114670_64	UniRef90	UniRef90_UPI00047EC3F2	helix-turn-helix domain-containing protein	NA
UHGV-0114670_64	eggNOG-mapper	1005705.HMPREF9967_0944	Peptidase S24-like	NA
UHGV-0114670_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114670_64	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0114670_64	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA