UHGV-0114753

Genome information

Genome length 41,778 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114753
vOTU ID	vOTU-009204
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_304630
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.83
Jumbo phage	No

Genome content
Genome length	41,778 bps
GC content	41.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.56%
Average CDS length	722.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114753_1	KOfam	K06882	NA	NA
UHGV-0114753_1	PHROG	phrog_435	endolysin	lysis
UHGV-0114753_1	UniRef90	UniRef90_A0A3D3D8P2	Fibronectin type-III domain-containing protein	NA
UHGV-0114753_1	eggNOG-mapper	877414.ATWA01000007_gene202	Fibronectin type 3 domain	NA
UHGV-0114753_1	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0114753_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0114753_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0114753_2	KOfam	K06882	NA	NA
UHGV-0114753_2	UniRef90	UniRef90_A0A374FS83	Fibronectin type-III domain-containing protein (Fragment)	NA
UHGV-0114753_2	eggNOG-mapper	877414.ATWA01000083_gene1334	Fibronectin type 3 domain	NA
UHGV-0114753_2	COG	COG3209	NA	NA
UHGV-0114753_3	KOfam	K14059	int; integrase	NA
UHGV-0114753_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0114753_3	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0114753_3	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0114753_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114753_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114753_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0114753_4	PHROG	phrog_5978	NA	unknown function
UHGV-0114753_4	UniRef90	UniRef90_A0A2N0UXR1	Adenosine monophosphate-protein transferase SoFic	NA
UHGV-0114753_4	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0114753_4	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0114753_4	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0114753_4	COG	COG3177	Fic family protein	NA
UHGV-0114753_4	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0114753_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0114753_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114753_5	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-0114753_5	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0114753_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114753_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0114753_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0114753_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0114753_6	UniRef90	UniRef90_A0A373XYJ8	XRE family transcriptional regulator	NA
UHGV-0114753_6	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-0114753_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0114753_7	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0114753_9	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0114753_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0114753_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0114753_13	PHROG	phrog_1499	NA	unknown function
UHGV-0114753_13	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0114753_13	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0114753_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0114753_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0114753_13	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0114753_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114753_15	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0114753_15	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0114753_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0114753_15	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0114753_16	PHROG	phrog_2698	NA	unknown function
UHGV-0114753_16	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0114753_16	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0114753_16	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0114753_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0114753_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0114753_17	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0114753_17	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0114753_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0114753_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0114753_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0114753_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0114753_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0114753_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0114753_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0114753_18	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0114753_18	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0114753_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0114753_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0114753_18	COG	COG3598	RecA-family ATPase	NA
UHGV-0114753_18	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0114753_19	PHROG	phrog_16687	NA	unknown function
UHGV-0114753_19	eggNOG-mapper	1214217.ALNF01000014_gene1395	NA	NA
UHGV-0114753_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114753_20	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0114753_20	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0114753_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0114753_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0114753_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0114753_21	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0114753_23	PHROG	phrog_5051	NA	unknown function
UHGV-0114753_24	Structural annotation	TIGR01636	NA	NA
UHGV-0114753_25	PHROG	phrog_8680	NA	unknown function
UHGV-0114753_25	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-0114753_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0114753_25	Pfam	PF14386	NA	DUF4417
UHGV-0114753_25	Structural annotation	PF14386	NA	NA
UHGV-0114753_27	PHROG	phrog_9479	NA	unknown function
UHGV-0114753_27	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0114753_27	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-0114753_27	Structural annotation	PF15529	NA	NA
UHGV-0114753_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114753_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114753_28	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0114753_28	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0114753_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114753_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114753_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0114753_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114753_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0114753_29	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0114753_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0114753_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0114753_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114753_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0114753_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114753_30	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0114753_30	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0114753_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114753_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114753_31	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-0114753_31	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0114753_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114753_31	COG	COG2369	NA	NA
UHGV-0114753_31	Structural annotation	PF06152	NA	NA
UHGV-0114753_32	PHROG	phrog_20195	NA	unknown function
UHGV-0114753_33	PHROG	phrog_2616	NA	unknown function
UHGV-0114753_33	Structural annotation	PF01281	NA	NA
UHGV-0114753_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0114753_34	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0114753_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0114753_35	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0114753_35	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0114753_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0114753_36	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0114753_37	PHROG	phrog_8710	NA	unknown function
UHGV-0114753_37	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0114753_37	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0114753_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114753_38	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0114753_39	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0114753_39	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0114753_39	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0114753_39	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0114753_39	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0114753_40	PHROG	phrog_820	major tail protein	tail
UHGV-0114753_40	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0114753_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114753_41	PHROG	phrog_8300	NA	unknown function
UHGV-0114753_41	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0114753_41	Structural annotation	PF06854	NA	NA
UHGV-0114753_42	PHROG	phrog_8355	NA	unknown function
UHGV-0114753_42	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-0114753_42	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0114753_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0114753_43	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0114753_43	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0114753_43	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0114753_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0114753_44	PHROG	phrog_1194	NA	unknown function
UHGV-0114753_44	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0114753_44	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0114753_44	Pfam	PF20458	NA	DUF6711
UHGV-0114753_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0114753_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0114753_46	Structural annotation	PF08931	NA	NA
UHGV-0114753_48	PHROG	phrog_199	holin	lysis
UHGV-0114753_48	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0114753_48	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0114753_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0114753_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0114753_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0114753_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0114753_49	PHROG	phrog_918	NA	unknown function
UHGV-0114753_49	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0114753_49	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0114753_49	Pfam	PF19791	NA	DUF6275
UHGV-0114753_49	Structural annotation	PF19791	NA	NA
UHGV-0114753_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114753_50	PHROG	phrog_20388	endolysin	lysis
UHGV-0114753_50	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114753_50	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114753_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0114753_50	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114753_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114753_50	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0114753_51	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-0114753_51	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-0114753_51	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-0114753_51	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0114753_51	Pfam	PF04991	LicD family	LicD
UHGV-0114753_51	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0114753_52	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-0114753_52	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0114753_52	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-0114753_52	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-0114753_52	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0114753_52	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0114753_52	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA