UHGV-0114770

Genome information

Genome length 45,478 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114770
vOTU ID	vOTU-069382
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308177
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.77
Jumbo phage	No

Genome content
Genome length	45,478 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	93.33%
Average CDS length	648.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114770_2	KOfam	K00971	manC, cpsB; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]	NA
UHGV-0114770_2	UniRef90	UniRef90_UPI0019611C9F	sugar phosphate nucleotidyltransferase	NA
UHGV-0114770_2	eggNOG-mapper	1268240.ATFI01000003_gene5242	Nucleotidyl transferase	NA
UHGV-0114770_2	Pfam	PF00483	Nucleotidyl transferase	NTP_transferase
UHGV-0114770_2	Pfam	PF01050	Mannose-6-phosphate isomerase	MannoseP_isomer
UHGV-0114770_2	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0114770_4	PHROG	phrog_1583	NA	unknown function
UHGV-0114770_4	UniRef90	UniRef90_UPI0007ECB3AE	NA	NA
UHGV-0114770_4	eggNOG-mapper	641143.HMPREF9331_01554	NA	NA
UHGV-0114770_4	Pfam	PF03235	NA	DUF262
UHGV-0114770_4	COG	COG1479	NA	NA
UHGV-0114770_5	UniRef90	UniRef90_UPI0009EB39C3	Abi family protein	NA
UHGV-0114770_5	eggNOG-mapper	768726.HMPREF9178_1216	NA	NA
UHGV-0114770_6	PHROG	phrog_18375	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0114770_6	UniRef90	UniRef90_A0A374C4V9	VirE_N domain-containing protein	NA
UHGV-0114770_6	eggNOG-mapper	1002367.HMPREF0673_01227	VirE N-terminal domain	NA
UHGV-0114770_6	PADLOC	drt-cluster64	DRT	DRT
UHGV-0114770_6	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-0114770_6	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0114770_6	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0114770_6	Structural annotation	PF08800, NF040562	NA	NA
UHGV-0114770_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0114770_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0114770_7	UniRef90	UniRef90_UPI00083AA81D	reverse transcriptase domain-containing protein	NA
UHGV-0114770_7	eggNOG-mapper	1002367.HMPREF0673_01228	reverse transcriptase	NA
UHGV-0114770_7	PADLOC	drt-UG39	DRT	DRT
UHGV-0114770_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0114770_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0114770_8	eggNOG-mapper	1227739.Hsw_PA0103	NA	NA
UHGV-0114770_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0114770_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0114770_12	UniRef90	UniRef90_A0A414Z9E5	Site-specific integrase	NA
UHGV-0114770_12	eggNOG-mapper	1122971.BAME01000031_gene3052	Belongs to the 'phage' integrase family	NA
UHGV-0114770_12	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0114770_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114770_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114770_12	Structural annotation	PF00589, PF13102, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0114770_13	eggNOG-mapper	1235788.C802_04554	Arm DNA-binding domain	NA
UHGV-0114770_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114770_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114770_14	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114770_14	UniRef90	UniRef90_UPI001C036F46	terminase small subunit	NA
UHGV-0114770_14	eggNOG-mapper	1123008.KB905702_gene2354	Terminase small subunit	NA
UHGV-0114770_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114770_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114770_14	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0114770_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114770_15	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0114770_15	UniRef90	UniRef90_A0A2T4TAI9	Terminase	NA
UHGV-0114770_15	eggNOG-mapper	1122981.AUME01000026_gene530	Terminase RNAseH like domain	NA
UHGV-0114770_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114770_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114770_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114770_15	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114770_16	PHROG	phrog_28240	NA	unknown function
UHGV-0114770_16	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0114770_16	eggNOG-mapper	1122981.AUME01000026_gene529	NA	NA
UHGV-0114770_17	PHROG	phrog_33245	NA	unknown function
UHGV-0114770_17	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0114770_17	eggNOG-mapper	1122981.AUME01000026_gene528	NA	NA
UHGV-0114770_17	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0114770_18	PHROG	phrog_31246	NA	unknown function
UHGV-0114770_18	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0114770_18	eggNOG-mapper	1122981.AUME01000026_gene527	NA	NA
UHGV-0114770_19	PHROG	phrog_37065	NA	unknown function
UHGV-0114770_19	eggNOG-mapper	1122981.AUME01000026_gene526	NA	NA
UHGV-0114770_19	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0114770_20	PHROG	phrog_33698	NA	unknown function
UHGV-0114770_20	eggNOG-mapper	1122981.AUME01000026_gene525	NA	NA
UHGV-0114770_20	Structural annotation	PF00386, NF033147, COG3501	NA	NA
UHGV-0114770_21	KOfam	K18626	TCHH; trichohyalin	NA
UHGV-0114770_21	PHROG	phrog_14295	NA	unknown function
UHGV-0114770_21	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0114770_21	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0114770_21	COG	COG1511	NA	NA
UHGV-0114770_22	PHROG	phrog_17790	NA	unknown function
UHGV-0114770_22	UniRef90	UniRef90_A0A7W7AUU3	Aminopeptidase N	NA
UHGV-0114770_22	eggNOG-mapper	1122981.AUME01000026_gene523	NA	NA
UHGV-0114770_24	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0114770_24	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0114770_25	PHROG	phrog_38431	NA	unknown function
UHGV-0114770_25	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0114770_25	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0114770_26	PHROG	phrog_34053	NA	unknown function
UHGV-0114770_27	PHROG	phrog_28898	NA	unknown function
UHGV-0114770_27	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0114770_27	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0114770_27	Structural annotation	PF10781	NA	NA
UHGV-0114770_28	Structural annotation	PF10628	NA	NA
UHGV-0114770_29	PHROG	phrog_16490	NA	unknown function
UHGV-0114770_29	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0114770_29	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0114770_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0114770_30	PHROG	phrog_33547	NA	unknown function
UHGV-0114770_30	UniRef90	UniRef90_UPI00048CACB1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0114770_30	eggNOG-mapper	1122981.AUME01000026_gene522	Clp protease	NA
UHGV-0114770_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0114770_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0114770_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0114770_31	PHROG	phrog_38780	NA	unknown function
UHGV-0114770_31	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0114770_31	eggNOG-mapper	1122981.AUME01000026_gene521	NA	NA
UHGV-0114770_31	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0114770_32	PHROG	phrog_21217	NA	unknown function
UHGV-0114770_32	eggNOG-mapper	1236514.BAKL01000015_gene1624	NA	NA
UHGV-0114770_33	PHROG	phrog_37138	NA	unknown function
UHGV-0114770_33	eggNOG-mapper	1122981.AUME01000026_gene519	NA	NA
UHGV-0114770_34	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0114770_34	eggNOG-mapper	1122981.AUME01000026_gene518	NA	NA
UHGV-0114770_34	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0114770_35	PHROG	phrog_24616	NA	unknown function
UHGV-0114770_35	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0114770_35	eggNOG-mapper	1122981.AUME01000026_gene517	NA	NA
UHGV-0114770_35	Structural annotation	PF20459	NA	NA
UHGV-0114770_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0114770_40	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-0114770_40	eggNOG-mapper	880074.BARVI_05555	NA	NA
UHGV-0114770_41	PHROG	phrog_1501	NA	unknown function
UHGV-0114770_41	UniRef90	UniRef90_A0A7M1RZR7	L,D-carboxypeptidase/transpeptidase	NA
UHGV-0114770_41	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0114770_41	Pfam	PF18925	NA	DUF5675
UHGV-0114770_41	Structural annotation	PF18925	NA	NA
UHGV-0114770_42	eggNOG-mapper	983544.Lacal_2877	NA	NA
UHGV-0114770_43	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0114770_43	UniRef90	UniRef90_A0A1C7H0S7	HTH cro/C1-type domain-containing protein	NA
UHGV-0114770_43	eggNOG-mapper	983544.Lacal_2878	NA	NA
UHGV-0114770_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114770_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114770_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114770_43	Structural annotation	PF06114, PF01381, NF038139, COG2856, COG1476	NA	NA
UHGV-0114770_44	eggNOG-mapper	226186.BT_4444	NA	NA
UHGV-0114770_51	PHROG	phrog_28300	NA	unknown function
UHGV-0114770_51	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0114770_54	PHROG	phrog_32914	NA	unknown function
UHGV-0114770_57	PHROG	phrog_874	NA	unknown function
UHGV-0114770_57	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0114770_57	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0114770_58	PHROG	phrog_12005	NA	unknown function
UHGV-0114770_58	Structural annotation	PF20204	NA	NA
UHGV-0114770_65	PHROG	phrog_4433	NA	unknown function
UHGV-0114770_65	eggNOG-mapper	619693.HMPREF6745_2502	DNA-templated transcription, initiation	NA
UHGV-0114770_65	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0114770_65	Structural annotation	NF007410	NA	NA