UHGV-0114774

Genome information

Genome length 27,818 bps

CDS count 37

Completeness 71.23% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114774
vOTU ID	vOTU-029904
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284586
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.85
Jumbo phage	No

Genome content
Genome length	27,818 bps
GC content	45.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.19%
Average CDS length	704.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114774_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0114774_4	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0114774_4	UniRef90	UniRef90_A0A174B4R3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0114774_4	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0114774_4	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0114774_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0114774_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0114774_4	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0114774_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114774_5	UniRef90	UniRef90_A0A174SAH0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0114774_5	eggNOG-mapper	1235792.C808_05326	NA	NA
UHGV-0114774_5	Structural annotation	PF02996	NA	NA
UHGV-0114774_7	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0114774_7	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-0114774_7	eggNOG-mapper	1536772.R70723_06635	transposase activity	NA
UHGV-0114774_7	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0114774_7	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0114774_7	Structural annotation	PF07141	NA	NA
UHGV-0114774_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114774_8	UniRef90	UniRef90_A0A174B1X3	Phage terminase, large subunit, PBSX family	NA
UHGV-0114774_8	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0114774_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114774_8	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0114774_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114774_9	UniRef90	UniRef90_A0A174B3T3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114774_9	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-0114774_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114774_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114774_10	PHROG	phrog_25639	NA	unknown function
UHGV-0114774_10	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0114774_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114774_11	UniRef90	UniRef90_A0A174B2Q8	Phage minor capsid protein 2	NA
UHGV-0114774_11	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0114774_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114774_11	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0114774_11	Structural annotation	PF06152	NA	NA
UHGV-0114774_13	PHROG	phrog_3675	NA	unknown function
UHGV-0114774_13	UniRef90	UniRef90_A0A174B2I0	YjcQ protein	NA
UHGV-0114774_13	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0114774_13	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0114774_14	PHROG	phrog_918	NA	unknown function
UHGV-0114774_14	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0114774_14	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0114774_14	Pfam	PF19791	NA	DUF6275
UHGV-0114774_14	Structural annotation	PF19791	NA	NA
UHGV-0114774_15	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0114774_15	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0114774_15	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0114774_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114774_17	UniRef90	UniRef90_A0A174B6A1	Phage minor structural protein GP20	NA
UHGV-0114774_17	eggNOG-mapper	1294142.CINTURNW_1028	Phage minor structural protein GP20	NA
UHGV-0114774_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114774_17	Structural annotation	PF06810	NA	NA
UHGV-0114774_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0114774_18	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-0114774_18	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0114774_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0114774_19	PHROG	phrog_15682	NA	unknown function
UHGV-0114774_19	UniRef90	UniRef90_UPI001788BFA4	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0114774_19	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0114774_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0114774_20	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0114774_21	PHROG	phrog_8710	NA	unknown function
UHGV-0114774_21	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0114774_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0114774_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114774_22	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0114774_23	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0114774_23	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0114774_23	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0114774_23	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0114774_23	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0114774_24	PHROG	phrog_820	major tail protein	tail
UHGV-0114774_24	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0114774_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114774_25	PHROG	phrog_8300	NA	unknown function
UHGV-0114774_25	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0114774_25	Structural annotation	PF06854	NA	NA
UHGV-0114774_26	PHROG	phrog_8355	NA	unknown function
UHGV-0114774_26	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0114774_26	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0114774_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114774_27	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0114774_27	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0114774_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0114774_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0114774_28	PHROG	phrog_1194	NA	unknown function
UHGV-0114774_28	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0114774_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0114774_29	PHROG	phrog_6616	tail protein	tail
UHGV-0114774_29	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0114774_29	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0114774_29	COG	COG4926	Phage-related protein	NA
UHGV-0114774_29	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0114774_30	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0114774_30	PHROG	phrog_11037	NA	unknown function
UHGV-0114774_30	UniRef90	UniRef90_A0A174B682	NlpC/P60 family	NA
UHGV-0114774_30	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0114774_30	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0114774_30	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0114774_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114774_30	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0114774_31	PHROG	phrog_24267	NA	unknown function
UHGV-0114774_31	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-0114774_31	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0114774_31	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0114774_32	PHROG	phrog_19695	NA	unknown function
UHGV-0114774_32	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0114774_32	Structural annotation	PF19714	NA	NA
UHGV-0114774_33	PHROG	phrog_28673	tail protein	tail
UHGV-0114774_33	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0114774_35	PHROG	phrog_199	holin	lysis
UHGV-0114774_35	UniRef90	UniRef90_A0A373MZ88	Holin	NA
UHGV-0114774_35	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0114774_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0114774_35	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0114774_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0114774_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114774_36	PHROG	phrog_3088	amidase	lysis
UHGV-0114774_36	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114774_36	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0114774_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0114774_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114774_36	COG	COG3087	Cell division protein FtsN	NA
UHGV-0114774_36	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA