UHGV-0114786

Genome information

Genome length 41,580 bps

CDS count 74

Completeness 82.07% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114786
vOTU ID	vOTU-034399
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293941
BioSample	SAMEA4431888
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	82.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.45
Jumbo phage	No

Genome content
Genome length	41,580 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	86.16%
Average CDS length	489.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114786_1	UniRef90	UniRef90_R6NQM1	Putative TnpX site-specific recombinase	NA
UHGV-0114786_1	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0114786_1	Structural annotation	TIGR03826	NA	NA
UHGV-0114786_2	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0114786_2	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0114786_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114786_5	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0114786_5	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114786_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114786_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114786_5	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0114786_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114786_7	PHROG	phrog_435	endolysin	lysis
UHGV-0114786_7	UniRef90	UniRef90_A0A4R3JAD4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114786_7	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0114786_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0114786_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0114786_7	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0114786_8	PHROG	phrog_918	NA	unknown function
UHGV-0114786_8	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0114786_8	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0114786_8	Pfam	PF19791	NA	DUF6275
UHGV-0114786_8	Structural annotation	PF19791	NA	NA
UHGV-0114786_9	PHROG	phrog_199	holin	lysis
UHGV-0114786_9	UniRef90	UniRef90_S2YKE1	Toxin secretion/phage lysis holin	NA
UHGV-0114786_9	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0114786_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0114786_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0114786_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0114786_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0114786_13	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0114786_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0114786_13	UniRef90	UniRef90_C0BXB1	Phage integrase SAM-like domain protein	NA
UHGV-0114786_13	eggNOG-mapper	553973.CLOHYLEM_04448	Belongs to the 'phage' integrase family	NA
UHGV-0114786_13	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0114786_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114786_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114786_13	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0114786_15	PHROG	phrog_24103	NA	unknown function
UHGV-0114786_15	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0114786_18	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0114786_18	Structural annotation	PF09136	NA	NA
UHGV-0114786_19	PHROG	phrog_16164	NA	unknown function
UHGV-0114786_19	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0114786_19	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0114786_20	PHROG	phrog_21765	NA	unknown function
UHGV-0114786_20	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-0114786_20	eggNOG-mapper	1423807.BACO01000048_gene1416	NA	NA
UHGV-0114786_21	PHROG	phrog_14030	NA	unknown function
UHGV-0114786_21	UniRef90	UniRef90_A0A4R3JAE4	Phage_lysozyme2 domain-containing protein	NA
UHGV-0114786_21	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0114786_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0114786_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114786_22	PHROG	phrog_13289	tail protein	tail
UHGV-0114786_22	UniRef90	UniRef90_A0A4R3J966	Phage minor structural protein	NA
UHGV-0114786_22	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0114786_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114786_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0114786_22	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0114786_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0114786_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114786_23	UniRef90	UniRef90_A0A4R3J874	Putative phage tail component-like protein	NA
UHGV-0114786_23	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0114786_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0114786_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114786_23	Structural annotation	PF20753, PF05709, TIGR01633, COG4722	NA	NA
UHGV-0114786_24	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0114786_24	UniRef90	UniRef90_A0A4R3J7W5	TP901 family phage tail tape measure protein	NA
UHGV-0114786_24	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0114786_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114786_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114786_24	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0114786_24	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0114786_25	PHROG	phrog_3033	NA	unknown function
UHGV-0114786_25	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0114786_25	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0114786_26	PHROG	phrog_709	NA	unknown function
UHGV-0114786_26	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0114786_26	Structural annotation	PF11836	NA	NA
UHGV-0114786_27	PHROG	phrog_88	major tail protein	tail
UHGV-0114786_27	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0114786_27	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0114786_27	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0114786_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0114786_28	PHROG	phrog_78	tail terminator	connector
UHGV-0114786_28	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0114786_28	Structural annotation	PF20765	NA	NA
UHGV-0114786_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114786_29	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0114786_29	eggNOG-mapper	764299.STRIC_2426	NA	NA
UHGV-0114786_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114786_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0114786_30	PHROG	phrog_19734	NA	unknown function
UHGV-0114786_30	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0114786_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114786_31	PHROG	phrog_749	NA	unknown function
UHGV-0114786_31	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0114786_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114786_32	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0114786_32	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0114786_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114786_32	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0114786_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114786_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114786_32	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114786_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0114786_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0114786_33	UniRef90	UniRef90_A0A4R3J973	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0114786_33	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0114786_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0114786_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0114786_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0114786_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114786_34	UniRef90	UniRef90_A0A4V2UQ51	HK97 family phage portal protein	NA
UHGV-0114786_34	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0114786_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114786_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114786_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114786_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114786_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114786_35	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0114786_35	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0114786_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114786_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114786_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114786_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0114786_36	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0114786_36	UniRef90	UniRef90_A0A2N5Q1Z2	RNA polymerase subunit sigma-70	NA
UHGV-0114786_36	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0114786_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0114786_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0114786_37	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0114786_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114786_37	UniRef90	UniRef90_A0A4R3JPH6	HNH endonuclease	NA
UHGV-0114786_37	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0114786_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114786_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114786_38	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0114786_38	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0114786_38	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0114786_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114786_41	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0114786_41	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0114786_41	Structural annotation	MF_00307	NA	NA
UHGV-0114786_42	PHROG	phrog_6568	NA	unknown function
UHGV-0114786_44	PHROG	phrog_15198	NA	unknown function
UHGV-0114786_44	UniRef90	UniRef90_S2YRM1	NA	NA
UHGV-0114786_44	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0114786_44	Pfam	PF04448	NA	DUF551
UHGV-0114786_47	PHROG	phrog_10714	NA	unknown function
UHGV-0114786_47	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0114786_48	eggNOG-mapper	1235792.C808_05356	NA	NA
UHGV-0114786_53	PHROG	phrog_15077	NA	unknown function
UHGV-0114786_53	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0114786_54	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0114786_54	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0114786_54	UniRef90	UniRef90_A0A4R3JSC6	Chromosome partitioning protein	NA
UHGV-0114786_54	eggNOG-mapper	457421.CBFG_03698	AAA domain	NA
UHGV-0114786_54	Pfam	PF13614	AAA domain	AAA_31
UHGV-0114786_54	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0114786_54	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0114786_55	PHROG	phrog_17690	NA	unknown function
UHGV-0114786_55	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0114786_57	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0114786_57	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0114786_57	UniRef90	UniRef90_A0A4R3JPH8	RNase H superfamily protein	NA
UHGV-0114786_57	eggNOG-mapper	1144319.PMI16_02747	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0114786_57	Pfam	PF00075	RNase H	RNase_H
UHGV-0114786_57	COG	COG0328	Ribonuclease HI	NA
UHGV-0114786_57	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0114786_58	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114786_58	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0114786_58	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0114786_58	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0114786_59	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0114786_59	PHROG	phrog_24603	NA	unknown function
UHGV-0114786_59	UniRef90	UniRef90_A0A4V2UQ37	Sporulation initiation factor Spo0A-like protein	NA
UHGV-0114786_59	eggNOG-mapper	658088.HMPREF0987_02126	response regulator	NA
UHGV-0114786_59	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0114786_59	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0114786_61	eggNOG-mapper	97139.C824_05931	NA	NA
UHGV-0114786_62	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0114786_62	PHROG	phrog_200	lipoprotein	other
UHGV-0114786_62	UniRef90	UniRef90_A0A4R3JPJ4	Regulator of protease activity HflC (Stomatin/prohibitin superfamily)	NA
UHGV-0114786_62	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0114786_62	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0114786_62	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0114786_62	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0114786_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114786_64	UniRef90	UniRef90_A0A4R3JSD6	Helix-turn-helix protein	NA
UHGV-0114786_64	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0114786_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114786_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114786_64	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0114786_72	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0114786_72	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0114786_72	UniRef90	UniRef90_UPI0018A9CBC8	helix-turn-helix domain-containing protein	NA
UHGV-0114786_72	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114786_72	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114786_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114786_72	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0114786_74	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114786_74	PHROG	phrog_95	integrase	integration and excision
UHGV-0114786_74	UniRef90	UniRef90_UPI00156DCADD	recombinase family protein	NA
UHGV-0114786_74	eggNOG-mapper	97139.C824_05947	Resolvase, N terminal domain	NA
UHGV-0114786_74	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114786_74	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114786_74	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114786_74	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114786_74	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA