UHGV-0114787

Genome information

Genome length 25,175 bps

CDS count 39

Completeness 65.79% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114787
vOTU ID	vOTU-033991
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297561
BioSample	SAMEA4431872
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	88.44
Jumbo phage	No

Genome content
Genome length	25,175 bps
GC content	41.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.61%
Average CDS length	584.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114787_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114787_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0114787_2	UniRef90	UniRef90_A0A564TSP0	DNA-invertase hin	NA
UHGV-0114787_2	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0114787_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114787_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114787_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114787_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0114787_3	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114787_3	UniRef90	UniRef90_UPI001F1AF0A7	NUMOD4 domain-containing protein	NA
UHGV-0114787_3	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0114787_3	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0114787_3	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0114787_3	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0114787_3	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0114787_4	PHROG	phrog_28808	NA	unknown function
UHGV-0114787_5	PHROG	phrog_87	metallo-protease	other
UHGV-0114787_5	UniRef90	UniRef90_A0A1V0H7S9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0114787_5	eggNOG-mapper	1005705.HMPREF9967_1013	IrrE N-terminal-like domain	NA
UHGV-0114787_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114787_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0114787_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0114787_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114787_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114787_6	UniRef90	UniRef90_A0A2A5QFT6	Transcriptional regulator	NA
UHGV-0114787_6	eggNOG-mapper	64186.O21993_9CAUD	sequence-specific DNA binding	NA
UHGV-0114787_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114787_6	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-0114787_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0114787_7	UniRef90	UniRef90_A0A2A5QFT9	Transcriptional regulator	NA
UHGV-0114787_7	eggNOG-mapper	64186.O21995_9CAUD	sequence-specific DNA binding	NA
UHGV-0114787_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114787_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114787_8	PHROG	phrog_1456	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114787_8	UniRef90	UniRef90_UPI0015D25A32	transcriptional regulator	NA
UHGV-0114787_8	eggNOG-mapper	1035189.HMPREF9954_0287	NA	NA
UHGV-0114787_8	Structural annotation	PF02002, MF_01909, NF040582, COG5625	NA	NA
UHGV-0114787_9	PHROG	phrog_17359	NA	unknown function
UHGV-0114787_11	UniRef90	UniRef90_UPI0012BD7B3A	Ig-like domain-containing protein	NA
UHGV-0114787_11	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-0114787_11	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0114787_11	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0114787_11	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0114787_11	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0114787_12	PHROG	phrog_2486	NA	unknown function
UHGV-0114787_12	UniRef90	UniRef90_A0A139QHN0	NA	NA
UHGV-0114787_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0114787_13	UniRef90	UniRef90_UPI0012BD4DF0	siphovirus Gp157 family protein	NA
UHGV-0114787_13	eggNOG-mapper	1051631.F8HGQ6_9CAUD	Siphovirus Gp157	NA
UHGV-0114787_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0114787_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0114787_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114787_14	UniRef90	UniRef90_O21859	Orf233 gp	NA
UHGV-0114787_14	eggNOG-mapper	682370.C9W9K6_9CAUD	AAA domain	NA
UHGV-0114787_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0114787_14	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0114787_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0114787_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0114787_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0114787_15	UniRef90	UniRef90_O21860	Orf443 gp	NA
UHGV-0114787_15	eggNOG-mapper	90410.Q9XJC6_9CAUD	helicase activity	NA
UHGV-0114787_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0114787_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0114787_15	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0114787_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0114787_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0114787_16	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114787_16	UniRef90	UniRef90_Q9T1Z9	Orf124 gp	NA
UHGV-0114787_16	eggNOG-mapper	85154.O34042_BPO12	NA	NA
UHGV-0114787_16	AcrCatalog	cluster_1061	NA	NA
UHGV-0114787_16	Pfam	PF05037	NA	DUF669
UHGV-0114787_16	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0114787_17	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0114787_17	UniRef90	UniRef90_O21862	Orf271	NA
UHGV-0114787_17	eggNOG-mapper	1314.HKU360_01250	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0114787_17	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0114787_17	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0114787_17	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0114787_17	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0114787_18	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0114787_18	UniRef90	UniRef90_UPI0012BD5EAB	phage/plasmid primase, P4 family	NA
UHGV-0114787_18	eggNOG-mapper	1314.HKU360_01249	DNA primase	NA
UHGV-0114787_18	Pfam	PF19263	NA	DUF5906
UHGV-0114787_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0114787_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0114787_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0114787_18	Structural annotation	PF05272, PF03288, TIGR01613, COG3378	NA	NA
UHGV-0114787_19	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114787_19	UniRef90	UniRef90_A0A2I6QQY0	VRR-NUC domain-containing protein	NA
UHGV-0114787_19	eggNOG-mapper	90410.Q9XJD1_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0114787_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0114787_19	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0114787_20	PHROG	phrog_1982	NA	unknown function
UHGV-0114787_20	UniRef90	UniRef90_A0A448A968	Gp89	NA
UHGV-0114787_20	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0114787_21	Structural annotation	PF10750, MF_01054, NF001220, COG5515	NA	NA
UHGV-0114787_22	PHROG	phrog_1489	NA	unknown function
UHGV-0114787_22	UniRef90	UniRef90_O34049	ORF18	NA
UHGV-0114787_22	Structural annotation	PF13773	NA	NA
UHGV-0114787_23	PHROG	phrog_121	NA	unknown function
UHGV-0114787_23	UniRef90	UniRef90_UPI0012BCB374	NA	NA
UHGV-0114787_23	eggNOG-mapper	585203.SMSK564_1299	NA	NA
UHGV-0114787_23	Pfam	PF07852	NA	DUF1642
UHGV-0114787_25	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114787_25	UniRef90	UniRef90_UPI001F4FE61A	MazG-like family protein	NA
UHGV-0114787_25	eggNOG-mapper	306323.Q56S64_9CAUD	sequence-specific DNA binding	NA
UHGV-0114787_25	Structural annotation	PF12643, MF_01019, NF001613, COG1694	NA	NA
UHGV-0114787_26	PHROG	phrog_884	NA	unknown function
UHGV-0114787_26	UniRef90	UniRef90_UPI0015D0E4A2	NA	NA
UHGV-0114787_26	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0114787_26	Pfam	PF07116	NA	DUF1372
UHGV-0114787_26	Structural annotation	PF07116	NA	NA
UHGV-0114787_27	PHROG	phrog_1814	NA	unknown function
UHGV-0114787_27	UniRef90	UniRef90_UPI0012BB52A6	NA	NA
UHGV-0114787_27	Pfam	PF07067	NA	DUF1340
UHGV-0114787_27	Structural annotation	PF07067	NA	NA
UHGV-0114787_28	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0114787_28	UniRef90	UniRef90_O34055	Putative autolysin regulatory protein ArpU	NA
UHGV-0114787_28	eggNOG-mapper	173707.Q938L8_9CAUD	NA	NA
UHGV-0114787_28	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0114787_28	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0114787_29	UniRef90	UniRef90_A0A1F2H8L2	Terminase	NA
UHGV-0114787_29	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0114787_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114787_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114787_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0114787_30	UniRef90	UniRef90_A0A2C5WCW2	PBSX family phage terminase large subunit	NA
UHGV-0114787_30	eggNOG-mapper	646413.C5IUJ1_9CAUD	Pfam:Terminase_3C	NA
UHGV-0114787_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114787_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114787_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0114787_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114787_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114787_31	UniRef90	UniRef90_UPI0011703CB6	phage portal protein	NA
UHGV-0114787_31	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0114787_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114787_31	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0114787_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114787_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114787_32	UniRef90	UniRef90_A0A564TRG6	Phage minor capsid protein 2	NA
UHGV-0114787_32	eggNOG-mapper	646413.C5IUJ3_9CAUD	Phage minor capsid protein 2	NA
UHGV-0114787_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114787_32	Structural annotation	PF06152	NA	NA
UHGV-0114787_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114787_33	UniRef90	UniRef90_A0A3S4MNS5	Putative scaffolding protein	NA
UHGV-0114787_33	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0114787_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114787_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0114787_34	UniRef90	UniRef90_C5IUJ5	Major head protein	NA
UHGV-0114787_34	eggNOG-mapper	646413.C5IUJ5_9CAUD	peptidase activity	NA
UHGV-0114787_34	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0114787_34	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0114787_35	UniRef90	UniRef90_A0A3S4QL55	Transcription termination factor	NA
UHGV-0114787_35	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0114787_35	COG	COG0292	Ribosomal protein L20	NA
UHGV-0114787_35	Structural annotation	PF07498	NA	NA
UHGV-0114787_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0114787_36	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0114787_36	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0114787_37	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0114787_37	UniRef90	UniRef90_A0A2C5WI04	Minor capsid protein	NA
UHGV-0114787_37	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0114787_37	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0114787_37	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0114787_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114787_38	UniRef90	UniRef90_UPI00093F38D1	minor capsid protein	NA
UHGV-0114787_38	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0114787_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0114787_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0114787_39	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0114787_39	UniRef90	UniRef90_A0A2C5WHK7	Capsid protein	NA
UHGV-0114787_39	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0114787_39	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3