UHGV-0114793

Genome information

Genome length 39,606 bps

CDS count 61

Completeness 95.71% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114793
vOTU ID	vOTU-065404
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293928
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.4
Jumbo phage	No

Genome content
Genome length	39,606 bps
GC content	45.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.50%
Average CDS length	582.44 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114793_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0114793_1	UniRef90	UniRef90_A0A6N3HK61	HTH cro/C1-type domain-containing protein	NA
UHGV-0114793_1	eggNOG-mapper	888746.HMPREF9180_0489	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114793_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0114793_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0114793_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0114793_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0114793_3	UniRef90	UniRef90_A0A6N3EQT3	Peptidoglycan binding domain protein	NA
UHGV-0114793_3	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0114793_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0114793_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114793_3	Structural annotation	PF01471, PF00877, NF033742, NF038080, COG0791	NA	NA
UHGV-0114793_4	PHROG	phrog_199	holin	lysis
UHGV-0114793_4	UniRef90	UniRef90_A0A414ADK3	Holin	NA
UHGV-0114793_4	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0114793_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0114793_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0114793_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0114793_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0114793_5	eggNOG-mapper	742733.HMPREF9469_02877	NA	NA
UHGV-0114793_5	Structural annotation	PF09693	NA	NA
UHGV-0114793_6	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0114793_8	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0114793_8	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0114793_8	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0114793_10	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0114793_11	PHROG	phrog_18725	NA	unknown function
UHGV-0114793_11	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0114793_12	PHROG	phrog_32744	NA	unknown function
UHGV-0114793_12	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0114793_12	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0114793_13	PHROG	phrog_1194	NA	unknown function
UHGV-0114793_13	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0114793_13	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0114793_14	PHROG	phrog_37543	NA	unknown function
UHGV-0114793_14	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0114793_14	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0114793_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0114793_15	PHROG	phrog_706	NA	unknown function
UHGV-0114793_15	UniRef90	UniRef90_UPI00192502EA	Gp15 family bacteriophage protein	NA
UHGV-0114793_15	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0114793_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0114793_15	Structural annotation	PF06854	NA	NA
UHGV-0114793_16	PHROG	phrog_11299	NA	unknown function
UHGV-0114793_16	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0114793_17	PHROG	phrog_3099	NA	unknown function
UHGV-0114793_17	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0114793_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114793_18	PHROG	phrog_3266	tail completion	connector
UHGV-0114793_18	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0114793_18	Structural annotation	PF20765	NA	NA
UHGV-0114793_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114793_19	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-0114793_19	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0114793_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0114793_19	Structural annotation	PF11114	NA	NA
UHGV-0114793_20	PHROG	phrog_3366	NA	unknown function
UHGV-0114793_20	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0114793_20	Pfam	PF20536	NA	DUF6751
UHGV-0114793_20	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0114793_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0114793_21	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0114793_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114793_22	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-0114793_22	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0114793_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114793_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114793_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114793_22	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114793_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0114793_23	UniRef90	UniRef90_UPI000465501D	phage scaffolding protein	NA
UHGV-0114793_23	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0114793_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0114793_23	Structural annotation	PF06810	NA	NA
UHGV-0114793_24	PHROG	phrog_918	NA	unknown function
UHGV-0114793_24	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0114793_24	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0114793_24	Pfam	PF19791	NA	DUF6275
UHGV-0114793_24	Structural annotation	PF19791	NA	NA
UHGV-0114793_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0114793_25	UniRef90	UniRef90_UPI001D06AB58	phage minor capsid protein	NA
UHGV-0114793_25	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0114793_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0114793_25	COG	COG2369	NA	NA
UHGV-0114793_25	Structural annotation	PF06152	NA	NA
UHGV-0114793_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0114793_26	UniRef90	UniRef90_UPI001183517C	phage portal protein	NA
UHGV-0114793_26	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0114793_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114793_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0114793_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114793_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0114793_27	UniRef90	UniRef90_UPI0011836F65	terminase family protein	NA
UHGV-0114793_27	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0114793_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0114793_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114793_27	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0114793_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114793_28	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0114793_28	UniRef90	UniRef90_UPI0011823C89	terminase small subunit	NA
UHGV-0114793_28	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0114793_28	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0114793_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114793_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114793_28	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0114793_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114793_30	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0114793_30	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0114793_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114793_30	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0114793_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0114793_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0114793_31	UniRef90	UniRef90_A0A6N3HKR6	Tyrosine recombinase XerC	NA
UHGV-0114793_31	eggNOG-mapper	742740.HMPREF9474_04312	Belongs to the 'phage' integrase family	NA
UHGV-0114793_31	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0114793_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114793_31	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0114793_31	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0114793_34	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0114793_34	UniRef90	UniRef90_U2BNJ7	DNA primase/polymerase	NA
UHGV-0114793_34	eggNOG-mapper	411902.CLOBOL_06670	NA	NA
UHGV-0114793_34	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0114793_34	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0114793_34	Pfam	PF06048	NA	DUF927
UHGV-0114793_34	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0114793_34	COG	COG5519	NA	NA
UHGV-0114793_34	Structural annotation	PF06048, PF18662, MF_00016, NF005477, COG5519, COG4643	NA	NA
UHGV-0114793_35	Structural annotation	PF17399	NA	NA
UHGV-0114793_38	UniRef90	UniRef90_UPI00189796FC	zinc-ribbon domain-containing protein	NA
UHGV-0114793_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0114793_38	COG	COG1933	Archaeal DNA polymerase II, large subunit	NA
UHGV-0114793_38	Structural annotation	PF13248	NA	NA
UHGV-0114793_40	PHROG	phrog_7134	NA	unknown function
UHGV-0114793_40	UniRef90	UniRef90_A0A1W6BMZ4	Pathogenicity island protein	NA
UHGV-0114793_40	eggNOG-mapper	411902.CLOBOL_06678	NA	NA
UHGV-0114793_40	AcrCatalog	cluster_192647	NA	NA
UHGV-0114793_40	Structural annotation	PF13601	NA	NA
UHGV-0114793_44	UniRef90	UniRef90_A0A413LWC0	DNA-binding protein	NA
UHGV-0114793_44	eggNOG-mapper	646529.Desaci_3040	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0114793_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0114793_46	PHROG	phrog_6329	NA	unknown function
UHGV-0114793_46	UniRef90	UniRef90_A0A174WZW0	NA	NA
UHGV-0114793_46	eggNOG-mapper	279010.BL03487	NA	NA
UHGV-0114793_47	AcrCatalog	cluster_63593	NA	NA
UHGV-0114793_49	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0114793_49	UniRef90	UniRef90_D3ANR6	Toxin-antitoxin system, toxin component, Bro family	NA
UHGV-0114793_49	eggNOG-mapper	1298920.KI911353_gene2071	ORF6N domain	NA
UHGV-0114793_49	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0114793_49	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0114793_49	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0114793_50	UniRef90	UniRef90_R5EZG5	DNA binding domain protein excisionase family	NA
UHGV-0114793_50	eggNOG-mapper	642492.Clole_0783	Helix-turn-helix domain	NA
UHGV-0114793_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114793_50	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0114793_50	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0114793_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114793_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114793_51	UniRef90	UniRef90_R5FD62	DNA-binding helix-turn-helix protein	NA
UHGV-0114793_51	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0114793_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114793_51	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0114793_51	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0114793_53	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0114793_53	UniRef90	UniRef90_UPI00156DDDAE	ORF6N domain-containing protein	NA
UHGV-0114793_53	eggNOG-mapper	929506.CbC4_1188	ORF6N domain	NA
UHGV-0114793_53	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0114793_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0114793_54	UniRef90	UniRef90_UPI0015700B1F	helix-turn-helix transcriptional regulator	NA
UHGV-0114793_54	eggNOG-mapper	1410653.JHVC01000004_gene3225	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114793_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114793_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114793_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0114793_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114793_55	UniRef90	UniRef90_UPI00192DBA60	helix-turn-helix domain-containing protein	NA
UHGV-0114793_55	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0114793_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114793_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114793_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114793_57	PHROG	phrog_10934	NA	unknown function
UHGV-0114793_57	eggNOG-mapper	1410625.JHWK01000002_gene62	NA	NA
UHGV-0114793_59	KOfam	K14059	int; integrase	NA
UHGV-0114793_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0114793_59	UniRef90	UniRef90_UPI00156E2F1A	site-specific integrase	NA
UHGV-0114793_59	eggNOG-mapper	397288.C806_02995	Phage integrase family	NA
UHGV-0114793_59	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0114793_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114793_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114793_59	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0114793_61	UniRef90	UniRef90_A0A174IZD6	Heavy metal transport/detoxification protein	NA
UHGV-0114793_61	eggNOG-mapper	742740.HMPREF9474_01424	mercury ion transmembrane transporter activity	NA
UHGV-0114793_61	COG	COG2608	Copper chaperone CopZ	NA